Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p06
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    28   4.5  
Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 249 MGCLLTRTVVISVAHPFVDVPVTDLGVVSGENYADRGHFLINVLFL 386
           MG  L   +VIS+  PFV +PV      +G  ++ +  +L N +FL
Sbjct: 189 MGIFLILNLVISILTPFVYIPVILNMKQNGHLHSQQHIYLQNYIFL 234


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 345 YADRGHFLINVLFLVIHEDFDRTTLNADLAL 437
           YA+ G+F+ N +FL++H  F    L+   +L
Sbjct: 199 YAEIGNFICNCIFLLVHSKFKARFLHQQRSL 229


>Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical
           protein K05C4.4 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 77  IAFDQQFED*QRFPSSLRISEAWRHSAPQPEDFQR 181
           +A ++ FED    PSS   S  WRH + Q    ++
Sbjct: 392 LALEEHFEDEDNKPSSSTSSSFWRHISYQERSLKQ 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,453,231
Number of Sequences: 27780
Number of extensions: 313488
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)