Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p05
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...   129   3e-31
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    27   3.3  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   4.4  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score =  129 bits (312), Expect = 3e-31
 Identities = 70/218 (32%), Positives = 117/218 (53%), Gaps = 15/218 (6%)
 Frame = +2

Query: 68  PGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWGLRLFLKNGTLHRYGGFKE 247
           PG+L++    + +K+    +   +  ++I    + +F   + L++ LK+       GF +
Sbjct: 19  PGKLRIAPSGLGWKSPSLAEPFTLPISEIRRFCWSRFARGYELKIILKSKDPVSLDGFSQ 78

Query: 248 GEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQC 427
            + + +    K N++  + +KE S+KGWNWG A F G+ L F+V +  AFEIP+  V+  
Sbjct: 79  EDLDDLINVIKQNFDMGIEQKEFSIKGWNWGEANFLGSELVFDVNSRPAFEIPISAVTNT 138

Query: 428 N-TGKNEVTLEFHQNDDTPV------SLMEMRFHIPTSEVANDL--------DAVEAFHQ 562
           N +GKNEV LEF   DD  +       L+EMR ++P +    D         +A   F++
Sbjct: 139 NLSGKNEVALEFSTTDDKQIPSAQVDELVEMRLYVPGTTAKEDAADGEEVEQNAANLFYE 198

Query: 563 QVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQT 676
            +  +A +   +GDAI  F E+  LTPRGRYDI +++T
Sbjct: 199 SLKERADIGQAAGDAIVSFSEILLLTPRGRYDIDMYET 236


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/57 (31%), Positives = 34/57 (59%)
 Frame = -1

Query: 256 LLTFFKTSVSVQSTIFEKQT*APRTNELLEIHQLNVIS*YLFNFAGFTILENYVLVC 86
           LL+ F++S   +    +++  AP++   L+   + V+S +L + AGF I+E Y+L C
Sbjct: 279 LLSSFRSSFE-RDRRRQQEFLAPKSLTTLD---MAVVSEWLNSIAGFMIVEYYILQC 331


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 175 LLEIHQLNVIS*Y--LFNFAGFTILENYVLVCHF*PPWYHVSFYFCGNIVIL 26
           LL + + N++  +  LF FA F  L+ Y+L       +  V F FC +I+IL
Sbjct: 546 LLSVMKSNILRLFYVLFLFACFYGLD-YILCAELLQAFLRVVFTFCEHIIIL 596


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 89  LSFLTSLVPCFLLFLRKHRYTLKTP 15
           LSF+  L PCF LFL  + ++L +P
Sbjct: 192 LSFI--LFPCFSLFLSSNSFSLASP 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,233
Number of Sequences: 5004
Number of extensions: 64346
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)