Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21p05
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 178 3e-45
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 164 6e-41
AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical ... 30 1.3
Z81549-11|CAB04470.1| 335|Caenorhabditis elegans Hypothetical p... 29 4.1
AF040653-3|ABS83855.1| 390|Caenorhabditis elegans Hypothetical ... 28 7.1
Z93377-8|CAE17791.1| 318|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68748-8|CAL36498.1| 583|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 178 bits (434), Expect = 3e-45
Identities = 89/222 (40%), Positives = 132/222 (59%), Gaps = 1/222 (0%)
Frame = +2
Query: 14 MEFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWG 193
M L++ V E G++ G LK+T++++ FK K GK ++ +DI+ + +QK G
Sbjct: 1 MAELQFPGVYVEDVGHLAFGTLKLTEKSLNFKGDKGGKSVNVTGSDIDKLKWQKLGNKPG 60
Query: 194 LRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSF 373
LR+ L +G HR+GGFK+ + EK+ F +N+++ + + L +KGWN+G A+ G + F
Sbjct: 61 LRVGLNDGGAHRFGGFKDTDLEKIQSFTSSNWSQSIDQSNLFIKGWNYGQAEVKGKTVEF 120
Query: 374 NVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTS-EVANDLDAVE 550
+ FEIP VS KNE LEFHQNDD+ V LMEMRFH+P E D D VE
Sbjct: 121 SWEDKPIFEIPCTNVSNVIANKNEAVLEFHQNDDSKVQLMEMRFHMPIDLENEEDADKVE 180
Query: 551 AFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQT 676
F + V+ A + + + I + ++ C TPRGRYDIKV+ T
Sbjct: 181 EFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPT 222
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 164 bits (398), Expect = 6e-41
Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 1/222 (0%)
Frame = +2
Query: 14 MEFLEYNDVSAEIKGNMVPGRLKMTDQNIIFKNSKTGKVEQISANDIELVNFQKFIGSWG 193
M L++ V E G++ G L +T+ +I F K GK I+ D++ + +QK G
Sbjct: 1 MTELKFKGVYVEDIGHLTCGTLTLTENSINFIGDKGGKSVYITGTDVDKLKWQKLGNKPG 60
Query: 194 LRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKGWNWGTAKFNGAVLSF 373
LR+ L +G HR+GGF + + +K+ F +N++K + + L + GWN+G A G + F
Sbjct: 61 LRVGLSDGGAHRFGGFLDDDLQKIQSFTSSNWSKSINQSNLFINGWNYGQADVKGKNIEF 120
Query: 374 NVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTS-EVANDLDAVE 550
+ FEIP VS KNE LEFHQN+ + V LMEMRFH+P E D D VE
Sbjct: 121 SWENEPIFEIPCTNVSNVIANKNEAILEFHQNEQSKVQLMEMRFHMPVDLENEEDTDKVE 180
Query: 551 AFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQT 676
F + V+ A + + + I + ++ C TPRGRYDIKV+ T
Sbjct: 181 EFKKAVLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPT 222
>AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.4 protein.
Length = 360
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 273 NFATFSCSPSLKPPYLCKVPFLRNKRKPHEPMNFWKFTSSMS 148
+ A CSPS + ++ +P +R RKP P++ KF+ +S
Sbjct: 304 SIALLFCSPSWRDAFIGGIPIIRRFRKP--PVSLRKFSQKVS 343
>Z81549-11|CAB04470.1| 335|Caenorhabditis elegans Hypothetical
protein F55C9.13 protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +2
Query: 155 ELVNFQKFIGSWGLRLFLKNGTLHRYGGFKEGEQEKVAKFFKANYNKDMLEKELSLKG-- 328
E ++ + + S L LFLK Y K ++ KD+ KE ++K
Sbjct: 178 EHLHVNQKMSSRDLNLFLKRWMRGEYKSLKSLRCHVGSEASADEIFKDVKYKEENVKSVI 237
Query: 329 -WNWGTAKFNGAVLSFNVGTNTAFEIPLHYVS 421
WNWG K + F+ GT + YV+
Sbjct: 238 QWNWGFMKVKRVIYRFD-GTRATCVLKYGYVT 268
>AF040653-3|ABS83855.1| 390|Caenorhabditis elegans Hypothetical
protein K05F6.4 protein.
Length = 390
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 459 FIRMMTHLYH*WKCASTFPPVKWPMIWMQLKHS 557
FI+ T H K +TFPP+ + W LK S
Sbjct: 214 FIKFNTETDHIVKLFTTFPPINYFKFWHPLKPS 246
>Z93377-8|CAE17791.1| 318|Caenorhabditis elegans Hypothetical
protein F13A7.12 protein.
Length = 318
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 281 ANYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKN 442
+ YNKD+ EK+L K + + + N +S +G N + ++S KN
Sbjct: 158 SEYNKDLYEKDLKGKYYQYAVSDRNSMGMSAVLGDNGYKDQVTQHISASQFFKN 211
>Z68748-8|CAL36498.1| 583|Caenorhabditis elegans Hypothetical
protein F13H10.3c protein.
Length = 583
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 144 LMTLSW*ISRSSLVRGAYVCFSKMVLCTDTEVLKKVSKRRLQNSS 278
L+ + W + ++ LV G + S +C T + S +RLQ+ S
Sbjct: 149 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 193
>Z68748-4|CAD27622.1| 617|Caenorhabditis elegans Hypothetical
protein F13H10.3b protein.
Length = 617
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 144 LMTLSW*ISRSSLVRGAYVCFSKMVLCTDTEVLKKVSKRRLQNSS 278
L+ + W + ++ LV G + S +C T + S +RLQ+ S
Sbjct: 183 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 227
>Z68748-3|CAA92953.2| 615|Caenorhabditis elegans Hypothetical
protein F13H10.3a protein.
Length = 615
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 144 LMTLSW*ISRSSLVRGAYVCFSKMVLCTDTEVLKKVSKRRLQNSS 278
L+ + W + ++ LV G + S +C T + S +RLQ+ S
Sbjct: 181 LLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIESPKRLQDLS 225
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,344
Number of Sequences: 27780
Number of extensions: 361602
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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