Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21p02
(278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 144 2e-36
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 144 2e-36
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 0.28
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.1
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 24 4.6
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 24 4.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 23 8.0
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 23 8.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 23 8.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 23 8.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 23 8.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 23 8.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 23 8.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 23 8.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 23 8.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 23 8.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 23 8.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 23 8.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 23 8.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 144 bits (350), Expect = 2e-36
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = +2
Query: 5 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 184
HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEA
Sbjct: 92 HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEA 151
Query: 185 LRRAKFKFPGRQKIYVSXKWGFTKYERDEF 274
LRR ++KFPG+Q+I VS KWGF++Y RDE+
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 144 bits (349), Expect = 2e-36
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = +2
Query: 5 HPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEA 184
HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D +A IEA
Sbjct: 92 HPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEA 151
Query: 185 LRRAKFKFPGRQKIYVSXKWGFTKYERDEF 274
LRR ++KFPG+Q+I VS KWGF++Y RDE+
Sbjct: 152 LRRCQYKFPGQQRIIVSKKWGFSQYARDEY 181
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 0.28
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Frame = +2
Query: 2 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 169
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 170 QVIEALRRAKFKFPGRQKIYV 232
AL++A F PG+ +I V
Sbjct: 159 LAEHALKQAAFHLPGKYEIIV 179
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 1.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 106 STLRLAKRTTHPSLEPISSS 47
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 183 ASMTCAFHLSLERTDMMGC 127
A+ TC + L TD MGC
Sbjct: 294 AAATCKYVFDLHPTDRMGC 312
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 66 RLGCVVRLASLRVL*HVFALDSPSCPCALV 155
R+GC + + L ++ +V L CP AL+
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALI 281
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 23.0 bits (47), Expect = 8.0
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +3
Query: 111 HVFALDSPSC--PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYXRSGVSQSMNVMSLR 278
H+ +LDS S P AL + + VPS SSP VK ++ G S S SLR
Sbjct: 422 HIPSLDSSSLLTPLALPNKKAFQPVKF-RVPSFSSPLVKPASSSSFGRSHSHLGTSLR 478
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 174 SSRLCAVPSSSSPDVKRSTYXRSGVS 251
SS + P+S SPD+K Y G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 39 NILLMRITWKG 7
NI+L R TWKG
Sbjct: 935 NIILRRFTWKG 945
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,390
Number of Sequences: 5004
Number of extensions: 21571
Number of successful extensions: 75
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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