Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21p02
         (278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   8.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   8.6  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 156 SLERTDMMGCPMRTRATVP*G 94
           SLER D  GC       +P G
Sbjct: 572 SLERFDFCGCGWPQHMLIPKG 592


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 79  WCVWQASGYCSTCSHWTAHHV 141
           +CV   + YC TC    A  V
Sbjct: 289 FCVNIVTSYCKTCISGRAFQV 309


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 92  KPQGTVARVRIGQPIMSVRSSDRWKAQ 172
           KP+   ARV +G   +   S+   K+Q
Sbjct: 269 KPEAAPARVTLGVTSLLTLSTQHAKSQ 295


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  ALELIGSRLGCVVRLASLRVL*HVFALD 128
           A+ LIGS   C++ + +  V+  V  L+
Sbjct: 321 AVPLIGSYFNCIMFMVASSVVLTVLVLN 348


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 128 QPIMSVRSSDRWKAQVI 178
           +PI++ R SDR + +++
Sbjct: 275 EPILTERPSDRQRNEIL 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,899
Number of Sequences: 438
Number of extensions: 1428
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)