Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o23
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.15 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   1.8  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    26   2.4  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    24   7.3  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 136 ICFAVFFRFFGILHSHKHFATKI 68
           I F  FFRFFG L  ++HF   I
Sbjct: 278 ILFVEFFRFFGYLFDYEHFVLSI 300


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = -2

Query: 338 KIYNT*IHKSYLLFIFQQIA*NLWKILWQVWF 243
           ++Y+  +HK++L  +F+ ++ NL++++ Q  F
Sbjct: 195 RLYDQFMHKNHLCLVFELLSINLYELIKQNQF 226


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 77  REMFVAMKNAKKTKENSE-ADMV 142
           RE F  +K  +KTKEN+E AD V
Sbjct: 198 REDFTRLKKVQKTKENAEKADSV 220


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 340 TKYITHKYINPIYYSFFNK 284
           ++Y  H Y N  +YS FNK
Sbjct: 25  SQYRKHIYFNDCFYSTFNK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,203
Number of Sequences: 5004
Number of extensions: 20254
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)