Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o23
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    29   1.8  
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           27   5.4  
09_03_0101 + 12374771-12374926,12375505-12375731,12375816-123759...    27   5.4  
11_01_0198 - 1556215-1556298,1556412-1556580,1556666-1556921,155...    26   9.4  

>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 17  LKLSDXLEGRKEMPLSGNFRREMFVAMKNAKKTKENSEA 133
           +KLS  LEG  + P      ++   A KNAK T  + EA
Sbjct: 279 MKLSGGLEGGSDPPAFQRAEKQRLEAAKNAKGTAASKEA 317


>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 75   VAKCLWL*RMPKKRKKTA-KQIWLTMVKTIQQITMMKQTKQLPCLQNQLNRTNLPTL 242
            +A+CL+  ++P   +  + K +WL  + ++QQI    +     C+   L   NL T+
Sbjct: 838  LARCLYWEKLPSLGELVSLKHLWLECLPSLQQIGQSSEASSSNCVDLSL-PPNLDTM 893


>09_03_0101 +
           12374771-12374926,12375505-12375731,12375816-12375971,
           12376066-12376251,12376407-12376591,12376984-12376991
          Length = 305

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 325 HKYINPIYYSFFNKLL 278
           HK+  PIYY  FN LL
Sbjct: 254 HKFYGPIYYYVFNSLL 269


>11_01_0198 -
           1556215-1556298,1556412-1556580,1556666-1556921,
           1557000-1557114,1557191-1557441,1557565-1557892,
           1558197-1558358,1558846-1558985,1559325-1559436,
           1560028-1560200,1560411-1560506,1560687-1560930
          Length = 709

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 78  RRKFPESGISFLPSNXSLNFKLKTQ 4
           RR+   SG+S LPSN S  FKL T+
Sbjct: 528 RRQAIISGLSNLPSNVSEVFKLDTE 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,104,103
Number of Sequences: 37544
Number of extensions: 100119
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)