Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o13
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    53   3e-08
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    28   0.84 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   3.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   3.4  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    25   7.8  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +3

Query: 246 FDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVLE 425
           F GR  +    ++LAPH    +D +LL+  E+KYLN YH+ V TTL P+L         +
Sbjct: 534 FAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLSV----SAKK 589

Query: 426 WLTDECAPI 452
           WL+   +PI
Sbjct: 590 WLSKHTSPI 598


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 263 GASPIKITDNAVSQYMISAAVHLDSLDQIFVANPVLPYFVVPGFFAIVGATGQANVW 93
           GA+ +   D  +       A  +++L+   V     PY++ P    +VGAT  +++W
Sbjct: 134 GANILTTKDGTIKLADFGVATKINALEDHSVVGS--PYWMAPEVIELVGATTASDIW 188


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 535 ITNYPSQAKKTLIRTRGVTTFAGALDLVIGAHSSVSHSRTSL*PRCSNIGPKV 377
           +TN  ++ +  L+  RG++ F   L+     H+S SH  + +        PKV
Sbjct: 401 LTNLFTKLRCVLMHYRGISEFMTKLETKTPKHASSSHKSSIMSVNSDPTSPKV 453


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 254 PIKITDNAVSQYMISAAVHLDSLDQIFVANPVLPYFVVPGFF 129
           P+  T N VS    S +V  D   Q+   NP  PYF + G F
Sbjct: 319 PVLSTKN-VSHEEKSHSVQDDKSKQLLKPNPTQPYFYLRGSF 359


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 177 DLVQTIEMNSSADHVLADGIIGDFDGRGAVAFYTISLAPHQTACLDVNLLTD 332
           D+V  + M    D ++ D  +G  DG   +  +  S+  HQ       L+TD
Sbjct: 17  DIVNDVSMTEMEDEIMEDEQMGLVDGEDVLEEFDKSI--HQNLVTPGQLVTD 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,090
Number of Sequences: 5004
Number of extensions: 39813
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)