Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21o13
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0099 - 19044772-19044837,19044896-19045051,19045529-190456... 50 2e-06
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 48 5e-06
06_03_1033 - 27035977-27036144,27036420-27036544,27036695-270367... 47 1e-05
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 41 8e-04
09_02_0042 - 3402424-3402534,3403242-3403345,3403448-3403562,340... 28 6.0
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 28 6.0
08_02_0020 + 11303438-11304213,11304321-11304699 28 6.0
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 6.0
01_01_0343 + 2744123-2744311,2745238-2745291,2745517-2745587,274... 27 8.0
>11_05_0099 -
19044772-19044837,19044896-19045051,19045529-19045653,
19045773-19045844,19045947-19046051,19046509-19046563,
19047334-19047414,19047499-19047633,19048279-19048342,
19048844-19048911,19049082-19049168,19050247-19050501,
19050616-19050738,19050866-19051150,19051712-19051851,
19052385-19052445,19052537-19052637,19052807-19052870,
19053020-19053127
Length = 716
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/76 (36%), Positives = 40/76 (52%)
Frame = +3
Query: 243 DFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVL 422
+F +G +AF I+ AP+QT +D LLT EI+++N YHA L P L ++
Sbjct: 629 NFGDKGYLAFEHITWAPYQTKLIDTTLLTPAEIEWVNAYHADCRKILQPYLNEQ----EK 684
Query: 423 EWLTDECAPITRSNAP 470
EWL PI + P
Sbjct: 685 EWLRKATEPIAGLDRP 700
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 48.0 bits (109), Expect = 5e-06
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +3
Query: 243 DFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVL 422
+F +G +AF I+ AP+QT +D LL EI+++N YH+ L P L ++
Sbjct: 577 NFGDKGYLAFEHITWAPYQTKLIDATLLAPAEIEWVNTYHSDCRRILQPYLNEQ----EK 632
Query: 423 EWLTDECAPIT 455
EWL PIT
Sbjct: 633 EWLRKATEPIT 643
>06_03_1033 -
27035977-27036144,27036420-27036544,27036695-27036766,
27036872-27036976,27037513-27037567,27038196-27038276,
27039109-27039159,27039531-27039594,27040783-27040850,
27040993-27041079,27041401-27041655,27041768-27041890,
27042013-27042297,27042948-27043087,27043696-27043759,
27043929-27044048
Length = 620
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = +3
Query: 243 DFDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVL 422
+F +G +AF I+ P+QT +D LLT EI+++N YH+ L P L ++
Sbjct: 551 NFGDKGYLAFEHITWTPYQTKLIDTTLLTPAEIEWVNAYHSDCRKILQPYLNEQ----EK 606
Query: 423 EWLTDECAPITRS 461
EWL PI S
Sbjct: 607 EWLRKATEPIAAS 619
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +3
Query: 246 FDGRGAVAFYTISLAPHQTACLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVLE 425
F G + F ++ P Q+ +D++LL+ EI ++N YH V + P+L G++ L+
Sbjct: 654 FGGVSYLGFEKLTFVPIQSKLVDLSLLSPSEINWINEYHDEVWEKVSPLLS--GHS--LD 709
Query: 426 WLTDECAPI 452
WL P+
Sbjct: 710 WLRKNTRPL 718
>09_02_0042 -
3402424-3402534,3403242-3403345,3403448-3403562,
3404344-3404391,3404519-3404608,3404819-3404893,
3405001-3405153,3405695-3405779,3408051-3408121,
3408243-3408293,3409037-3409453,3409529-3409660,
3409779-3409892,3411113-3411179,3411264-3411397,
3411486-3411701,3412627-3413418
Length = 924
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 330 DLEIKYLNNYHARV-LTTLGPILEQRGYNDVLEWLTDECAPITRSNAPAKVVTPLVL 497
D E+ + Y A+V LT LG + + ++ WL D I N P + TPL L
Sbjct: 732 DSELFSASCYAAKVTLTALGEMFQAA--RSIMNWLGDCAKVIACENEPVRWTTPLGL 786
>09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 14 CICGFPSCVGFSTDIKA 64
C CGFP C G D++A
Sbjct: 979 CYCGFPKCRGVVNDVEA 995
>08_02_0020 + 11303438-11304213,11304321-11304699
Length = 384
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 85 VVSHTFACPVAPTIAKNPGTTK*GSTGFATKIWSRLSR 198
VV++T P + PGT + G+T K+W +R
Sbjct: 66 VVAYTVTDPSDDPVRPRPGTLRYGATVLPAKVWITFAR 103
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 267 AFYTISLAP--HQTACLDVNLLTDLEIKY-LNNYHARVLTTLGPI 392
A ++SL P HQTA + V+ + DL+I + H+R +L P+
Sbjct: 1086 ALSSLSLGPPVHQTAVVPVHAVHDLDISHAFKERHSRQQLSLSPL 1130
>01_01_0343 +
2744123-2744311,2745238-2745291,2745517-2745587,
2745704-2745785,2746242-2746340
Length = 164
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 306 CLDVNLLTDLEIKYLNNYHARVLTTLGPILEQRGYNDVLEW 428
C + +++++ + Y+ ++ L P+LEQR N VLEW
Sbjct: 112 CFPIGMVSEVGLVYIVVPFMKLQLRLLPLLEQRSKN-VLEW 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,478,687
Number of Sequences: 37544
Number of extensions: 269303
Number of successful extensions: 639
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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