Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o09
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    27   1.4  
SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   2.5  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    25   4.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   5.8  

>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 280 KANVDILFQ--GPSLGFSLTSMYPFRRSPRFLQYKNRTEAAETASINTSGIN-SGN 122
           + N D+L Q      GF    M P RR   F++Y +  EA   A   T+G++ SGN
Sbjct: 184 EVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREAT-VAKNGTTGMSLSGN 238


>SPBP4H10.12 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 145 TSGINSGNIDLSVLWIAVRFTILVFLY 65
           TSGI  G   +SV ++    TIL+F Y
Sbjct: 145 TSGIQIGVFCISVRFLITHLTILIFSY 171


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -2

Query: 277 ANVDILFQGPSLGFSLTSMYPFRRSPRFLQYKNRTEAAETASINTSG 137
           A  D  F G +LGF L S YP         YK  T+   T  IN +G
Sbjct: 223 AMADCDFLGQNLGFWLASSYP-------NAYKWETQLWRTVGINLNG 262


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 169 LLFYSCTARTAASDGKDTWTLRRSLMMDL 255
           ++++   ART  +DG   +T+R S  +DL
Sbjct: 459 VIYFDLFARTGKTDGAAHFTIRSSRELDL 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,858
Number of Sequences: 5004
Number of extensions: 28162
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)