Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o09
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0271 + 2243496-2243500,2245011-2245061,2245174-2245322,224...    28   2.4  
12_02_1161 - 26606730-26606861,26607320-26607460,26607465-26607578     27   4.2  
01_04_0013 + 15081879-15082370,15093535-15094050                       27   4.2  
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294...    27   5.6  
02_01_0700 + 5229681-5229719,5230235-5230334,5230406-5230463,523...    27   7.3  
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    26   9.7  

>01_01_0271 +
           2243496-2243500,2245011-2245061,2245174-2245322,
           2245870-2245970,2246327-2246385,2246763-2246809,
           2246952-2247030,2247139-2247211,2247294-2247413,
           2247685-2247744,2247881-2247994,2248921-2249016,
           2249094-2249333
          Length = 397

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 151 INTSGINSGNIDLSVLWIAVRFTILVFLYRYIYFCKLST 35
           ++TSGI S    L++ W+ VR   L F Y+ +   K  T
Sbjct: 248 MDTSGIKSSYPTLALTWLGVRLLHLWFRYQSLSVLKFRT 286


>12_02_1161 - 26606730-26606861,26607320-26607460,26607465-26607578
          Length = 128

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 377 YFITSYKSAHLALVPIGYKQHKKLVSTICRRLKSKR 270
           Y  TSY SAH ++VP  Y    K+ S   R + S R
Sbjct: 56  YSTTSYSSAHCSIVPEEYFIEDKIYSREYRGMYSGR 91


>01_04_0013 + 15081879-15082370,15093535-15094050
          Length = 335

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +1

Query: 190 ARTAASDGKDTWTL--RRSLMMD-LETIYRRLLFKRRHIVDTSFLCCLYP 330
           A TAA+D  D+W L  RR   +D L    R  +F      D     CL+P
Sbjct: 152 AATAAADDDDSWELYKRRVRPLDFLHATLRVFVFLALAFSDAGIQTCLFP 201


>11_01_0389 -
           2937242-2939476,2939556-2939666,2941254-2941450,
           2941543-2941633
          Length = 877

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 366 QLQKCSSCVGSYRV*AT*KTCVDNMSTLEKQTSIYC 259
           QL KCSSC+      A   TC  +++TL+    +YC
Sbjct: 590 QLLKCSSCLL-----AAHDTCFGSLATLDDSGQLYC 620


>02_01_0700 +
           5229681-5229719,5230235-5230334,5230406-5230463,
           5230542-5230898,5230991-5231088,5232054-5232144,
           5232183-5232243
          Length = 267

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 175 TEAAETASINTSGINSGNIDLSVLWIAVRFTILVFLYRYIYFCKLSTK 32
           T  A  AS+ +SG   G +++ +L I        FLY  IYF +LS K
Sbjct: 201 TAGAAAASLMSSGGGGGALEIQMLKIC-------FLYGSIYFKRLSLK 241


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 235  SLTSMYPFRRSPRFLQYKNRTEAAETASINTSGINSGNIDL 113
            S++S+Y   +  R +   N  +      IN+S +NSG +DL
Sbjct: 1036 SVSSVYEIGKGIRVINL-NEADNLVDVDINSSEVNSGTVDL 1075


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,153,618
Number of Sequences: 37544
Number of extensions: 161691
Number of successful extensions: 449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)