Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o09
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    27   3.8  
AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 23  SKRFSRKFTKINISVQEN*YCEPHSNPQNRQI 118
           S R +R F + N S ++  +C+PH  PQ  Q+
Sbjct: 519 SSRTTRSFVQ-NASTKKKWWCQPHKPPQEDQM 549


>AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical
           protein F23F1.5 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 274 NVDILFQGPSLGFSLTSMYPFRRSPRFLQYKNRTEAAE 161
           ++D L    S GF +  +      PR+ QYKN T+AAE
Sbjct: 4   DLDSLTDQLSSGFQVDPL-ALGEHPRYSQYKNLTKAAE 40


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 270 TFAFQASTYCRHKFFMLLIPDRNQRKMSTFVAGNKIKH*NSXKK 401
           TF F+  T C   FF+  +   + RKM     G ++K   S +K
Sbjct: 275 TFYFRLETICAINFFVYYLGSPSTRKMLKKYLGAEVKKEFSTRK 318


>Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical
           protein T07C5.4 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 371 ITSYKSAHLA-LVPIGYKQHKKLVSTICRRL 282
           I SY+  + + L+ + +K HKK   TICR L
Sbjct: 235 IASYQKVYTSSLLELCFKTHKKKAFTICRFL 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,495,724
Number of Sequences: 27780
Number of extensions: 157934
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)