Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o08
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    28   0.97 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   3.9  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/26 (65%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 546 KTLTPKSST-SYGATTPFFSVSSKNT 620
           KTLT + ST SYG T PFFS+SS  T
Sbjct: 96  KTLTNELSTWSYGLT-PFFSISSIKT 120


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 486 STPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           STP SS    +A  +++++  T    ++T+  ++TP  SVSS N+ T
Sbjct: 289 STPLSSANSTTAT-SASSTPLTSVNSTTTTSASSTPLSSVSSANSTT 334



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 477 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSS 611
           S  STP +S    SA   S+    +    +STS  +T P ++ SS
Sbjct: 369 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSS 413



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 477 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSS 611
           S  STP +S    SA   S+    +    +STS  +T P ++ SS
Sbjct: 483 SASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSS 527


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +3

Query: 477 SMISTPWSSETWDSAVFNSANSEK----TLTPKSSTSYGATTPFFSVSSKNTLT 626
           S  S+P SS +  S+  +S +S      T + KSS+S+ +T    S +S +TLT
Sbjct: 331 SFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLT 384


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 477 SMISTPWSSETWDSAVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNT 620
           S  STP SS +  S+  +S++S+ + + KSS+S  +++   S SS ++
Sbjct: 149 SSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 531 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           S  S  + T  +S+SY  TTP FS+     +T
Sbjct: 532 SPPSPSSSTKSASSSYSTTTPAFSIGPLTPMT 563


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
 Frame = +1

Query: 244 PLLSYFNDVCNPHSELKWY*EGDTAKSSAVRPLPYRNTSAK*PLTRVQNRKHLKARLHLT 423
           PLL  FND   P +           K S +     R+ ++   LT +  +   +  LH  
Sbjct: 168 PLLKSFNDSAIPENAANLSSSSKNMKDSTLSSQKARSNTSSSFLTPLHEQLESRCALHTA 227

Query: 424 RRTPANLK--LRL*QRKTP*A*SVLLGAVKRGT 516
            + P   K  LR  +  +P +   +L A+   T
Sbjct: 228 AKDPFRSKNSLRCNRGHSPLSSQQILPAISNNT 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,642
Number of Sequences: 5004
Number of extensions: 44481
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)