Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o08
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)               28   5.5  
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)                    28   7.2  
SB_17214| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 185 CIETFLSTLQNYRWLINLADH 247
           C   +LS+L++Y WL +L DH
Sbjct: 279 CNHEWLSSLRDYEWLCSLRDH 299


>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 498 SSETWDSAV-FNSANSEKTLTPKSSTSYGATTPFFSVSSKNTL 623
           ++ T D AV F +   ++ L   ++ SYGA+T  FS+ + N++
Sbjct: 4   NTSTRDIAVDFQTKRQKRKLRAATAASYGASTTQFSIGTVNSM 46


>SB_34620| Best HMM Match : KMP11 (HMM E-Value=0.59)
          Length = 668

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 215 FVTSIKMFRYSCKYPFFIMDYQGIKCTYYL 126
           + TS + FR SC  P+F     G +CT  L
Sbjct: 470 YPTSRRSFRVSCVLPYFQAFLSGFRCTTVL 499


>SB_17214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 348 VWEWPYGRTLC-CISFLVPF*LAVWITDIIEI 256
           +W WP+G  LC  +SFL  + L+  I  ++ I
Sbjct: 93  LWHWPFGLVLCKVLSFLQGWTLSASILTLLAI 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,983,161
Number of Sequences: 59808
Number of extensions: 323561
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)