Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o08
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U97549-7|AAB52848.3|  565|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    28   4.8  

>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 492 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           P SS T+ S    A  +S  S  T+ P SS++YG++TP  S SS  T++
Sbjct: 156 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 204



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = +3

Query: 492 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLL 632
           P SS T+ S+  + +S++S  T+T    SS++YG++TP  S SS  T + +
Sbjct: 218 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTI 268


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 492 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           P SS T+ S    A  +S  S  T+ P SS++YG++TP  S SS  T++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = +3

Query: 492 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLL 632
           P SS T+ S+  + +S++S  T+T    SS++YG++TP  S SS  T + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTI 475


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 492 PWSSETWDS----AVFNSANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           P SS T+ S    A  +S  S  T+ P SS++YG++TP  S SS  T++
Sbjct: 363 PGSSSTFASSTPIASSSSPGSTVTVAPGSSSTYGSSTPSASSSSSGTMS 411



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
 Frame = +3

Query: 492 PWSSETWDSA--VFNSANSEKTLT--PKSSTSYGATTPFFSVSSKNTLTLL 632
           P SS T+ S+  + +S++S  T+T    SS++YG++TP  S SS  T + +
Sbjct: 425 PVSSSTFGSSTPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAGTASTI 475


>U97549-7|AAB52848.3|  565|Caenorhabditis elegans Hypothetical
           protein F15A8.6 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 160 IIKNGYLQLYRNIFID---VTKLQMAYKLS*PLLSYFNDVCNPHS 285
           +   GY+QLY ++F++       +   KL   +  Y  D CNP S
Sbjct: 407 VAARGYIQLYSDLFVNNGTYNYAEKMTKLGNKVFMYSFDYCNPRS 451


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 531 SANSEKTLTPKSSTSYGATTPFFSVSSKNTLT 626
           +   E T T +SST+  ATTP  S +S+ T T
Sbjct: 641 TTTDEPTTTTESSTTGKATTPELSTTSEETTT 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,841,168
Number of Sequences: 27780
Number of extensions: 248343
Number of successful extensions: 500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)