Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o07
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   6.5  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   6.5  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   6.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   6.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   8.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   8.6  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 405 SVSQELATPRESKSKKPHTPSWLPVMPN 488
           S +Q+++  +++ S K   P+ LP++PN
Sbjct: 115 SSNQDISNDQKAPSFKEQEPATLPILPN 142


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 468 WLPVMPNSSHLDAVPQATPISRSRVH 545
           W P   N+  + ++  ATPI   R+H
Sbjct: 684 WKPAQLNNDSISSMALATPIGAIRIH 709


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +3

Query: 273 TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 452
           T EE  RL+ NGL            K  EV+   +   D   AVS  +   + +  K K+
Sbjct: 133 TLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEKVEKMKR 192


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 456 HTPSWLPVMPNSSHLDAVPQATPISRSRVHNKK 554
           H+P+ L V+ N S L A   +  ISRS+  ++K
Sbjct: 77  HSPTSLCVLENGSVLTANYNSASISRSKAKDEK 109


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 460 LHHGCQSCQTLLIWMLYPRLL 522
           LHH C      LIW+ +PR +
Sbjct: 217 LHHTCSVLIIFLIWLHHPRTI 237


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 390 KYKAVSVSQELATPRESKSKKPHTPSWLPVMP 485
           K  ++ + QEL+TP++    +P  PS  P+ P
Sbjct: 26  KDDSIVLEQELSTPKQVNQARPKFPS--PITP 55


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 199 SEPTQ*KSPPSSI*KLIGLSPYV 131
           S P + +SP + + K+IG SPYV
Sbjct: 348 SSPEKKESPATHLLKVIGSSPYV 370


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 438 SKSKKPHTPSWLPVMPNSSHLDAVPQATPIS 530
           SK K+   P   PV  +  H DA P+A PIS
Sbjct: 742 SKKKQTEIP---PVSSSPPHNDAPPKAKPIS 769


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,096
Number of Sequences: 5004
Number of extensions: 53580
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)