Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o07
         (611 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28485-1|AAC77830.1|  370|Drosophila melanogaster SNR1 protein.       233   1e-61
AY070501-1|AAL47972.1|  370|Drosophila melanogaster GH08712p pro...   233   1e-61
AE014297-255|AAF52024.1|  370|Drosophila melanogaster CG1064-PA ...   233   1e-61
AE013599-261|AAS64791.1|  196|Drosophila melanogaster CG33351-PA...    31   1.6  
AY060248-1|AAL25287.1|  311|Drosophila melanogaster GH07217p pro...    29   3.7  
AY058645-1|AAL13874.1|  850|Drosophila melanogaster LD34489p pro...    29   3.7  
AE013599-3971|AAF47285.1|  536|Drosophila melanogaster CG30420-P...    29   3.7  
AE013599-3967|AAF47283.2|  850|Drosophila melanogaster CG30420-P...    29   3.7  
AY118323-1|AAM48352.1| 1843|Drosophila melanogaster LD10526p pro...    29   6.5  
AE014298-2899|AAF48990.3| 2006|Drosophila melanogaster CG12238-P...    29   6.5  
BT025853-1|ABF85753.1| 1471|Drosophila melanogaster IP15211p pro...    28   8.6  
AF298216-1|AAG30224.1| 2130|Drosophila melanogaster DNA polymera...    28   8.6  
AF298215-1|AAG30223.1| 2130|Drosophila melanogaster DNA polymera...    28   8.6  
AE013599-501|AAF59191.2| 2130|Drosophila melanogaster CG1925-PA ...    28   8.6  

>U28485-1|AAC77830.1|  370|Drosophila melanogaster SNR1 protein.
          Length = 370

 Score =  233 bits (571), Expect = 1e-61
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 1/165 (0%)
 Frame = +3

Query: 120 MALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLI 299
           MAL+TYGDKP++FQ+EEGG++Y VGSEVGNY+R FRG LYKKYPGM R  L+NEERKRL 
Sbjct: 1   MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLA 60

Query: 300 DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSV-SQELATPRESKSKKPHTPSWLP 476
           ++GL  H         +A EV+DI+ GND+KY+AVSV + +   PRESKSKK   P ++P
Sbjct: 61  ESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKK--QPQYVP 118

Query: 477 VMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLEN 611
            MPNSSHLDAVPQATPI+R+RVH KKVRTFP+CFDDTD TA LEN
Sbjct: 119 TMPNSSHLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLEN 163


>AY070501-1|AAL47972.1|  370|Drosophila melanogaster GH08712p
           protein.
          Length = 370

 Score =  233 bits (571), Expect = 1e-61
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 1/165 (0%)
 Frame = +3

Query: 120 MALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLI 299
           MAL+TYGDKP++FQ+EEGG++Y VGSEVGNY+R FRG LYKKYPGM R  L+NEERKRL 
Sbjct: 1   MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLA 60

Query: 300 DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSV-SQELATPRESKSKKPHTPSWLP 476
           ++GL  H         +A EV+DI+ GND+KY+AVSV + +   PRESKSKK   P ++P
Sbjct: 61  ESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKK--QPQYVP 118

Query: 477 VMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLEN 611
            MPNSSHLDAVPQATPI+R+RVH KKVRTFP+CFDDTD TA LEN
Sbjct: 119 TMPNSSHLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLEN 163


>AE014297-255|AAF52024.1|  370|Drosophila melanogaster CG1064-PA
           protein.
          Length = 370

 Score =  233 bits (571), Expect = 1e-61
 Identities = 110/165 (66%), Positives = 132/165 (80%), Gaps = 1/165 (0%)
 Frame = +3

Query: 120 MALRTYGDKPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLI 299
           MAL+TYGDKP++FQ+EEGG++Y VGSEVGNY+R FRG LYKKYPGM R  L+NEERKRL 
Sbjct: 1   MALQTYGDKPVAFQLEEGGEYYYVGSEVGNYMRHFRGILYKKYPGMTRIVLSNEERKRLA 60

Query: 300 DNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSV-SQELATPRESKSKKPHTPSWLP 476
           ++GL  H         +A EV+DI+ GND+KY+AVSV + +   PRESKSKK   P ++P
Sbjct: 61  ESGLSSHILASSVSLLRAVEVDDIMAGNDEKYRAVSVNTSDTPVPRESKSKK--QPQYVP 118

Query: 477 VMPNSSHLDAVPQATPISRSRVHNKKVRTFPLCFDDTDMTAMLEN 611
            MPNSSHLDAVPQATPI+R+RVH KKVRTFP+CFDDTD TA LEN
Sbjct: 119 TMPNSSHLDAVPQATPINRNRVHTKKVRTFPMCFDDTDPTASLEN 163


>AE013599-261|AAS64791.1|  196|Drosophila melanogaster CG33351-PA
           protein.
          Length = 196

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 451 FLLLLSRGVANSWLTDTALYLSSFPSIMSSTSD 353
           F+LLL  GV +SW TD  L L   P I S+ +D
Sbjct: 3   FVLLLLLGVTSSWATDYELLLED-PDIFSTCTD 34


>AY060248-1|AAL25287.1|  311|Drosophila melanogaster GH07217p
           protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 387 DKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVR 560
           D+Y          +P E+ S     P +LP +PN   L ++P    +  S   N  +R
Sbjct: 80  DQYDNAEAEASYGSPMEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLR 137


>AY058645-1|AAL13874.1|  850|Drosophila melanogaster LD34489p
           protein.
          Length = 850

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 387 DKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVR 560
           D+Y          +P E+ S     P +LP +PN   L ++P    +  S   N  +R
Sbjct: 436 DQYDNAEAEASYGSPMEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLR 493


>AE013599-3971|AAF47285.1|  536|Drosophila melanogaster CG30420-PB,
           isoform B protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 387 DKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVR 560
           D+Y          +P E+ S     P +LP +PN   L ++P    +  S   N  +R
Sbjct: 122 DQYDNAEAEASYGSPMEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLR 179


>AE013599-3967|AAF47283.2|  850|Drosophila melanogaster CG30420-PA,
           isoform A protein.
          Length = 850

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/58 (25%), Positives = 24/58 (41%)
 Frame = +3

Query: 387 DKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNKKVR 560
           D+Y          +P E+ S     P +LP +PN   L ++P    +  S   N  +R
Sbjct: 436 DQYDNAEAEASYGSPMEAVSDLQSPPLYLPRLPNLPPLPSLPNRPSLGNSPNRNSVLR 493


>AY118323-1|AAM48352.1| 1843|Drosophila melanogaster LD10526p protein.
          Length = 1843

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 177  DFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNGL 311
            D + +  +V  YL +   S  +KYP + RR++  EER  L + GL
Sbjct: 1174 DTFMIQEQVALYLGIT--SFKRKYPDLPRRSVDMEERNWLQEKGL 1216


>AE014298-2899|AAF48990.3| 2006|Drosophila melanogaster CG12238-PA
            protein.
          Length = 2006

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 177  DFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNGL 311
            D + +  +V  YL +   S  +KYP + RR++  EER  L + GL
Sbjct: 1337 DTFMIQEQVALYLGIT--SFKRKYPDLPRRSVDMEERNWLQEKGL 1379


>BT025853-1|ABF85753.1| 1471|Drosophila melanogaster IP15211p
           protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +3

Query: 369 IIEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNS-SHLDAVPQATPISRSRVH 545
           ++  NDD+  ++  S   A P+E+ SKKP  P    +  +     D +   TP ++    
Sbjct: 450 VVVANDDEDNSLFGSSP-AMPKENPSKKPPKPVTKSLFDDDLEDDDFLSSFTPRAKPTEQ 508

Query: 546 NKKVRTFPLCFDDTDM 593
               +  P  FDD D+
Sbjct: 509 KLLSKPKPSLFDDDDL 524


>AF298216-1|AAG30224.1| 2130|Drosophila melanogaster DNA polymerase
           zeta catalyticsubunit protein.
          Length = 2130

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 348 KASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTP---SWLPVMPNSSHLDAVPQA 518
           KAS     I+G DD+ +   +    +  + S SK P TP     LP  P +    A  + 
Sbjct: 535 KASSKLPQIDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLPKSPRTPKTSAAKKY 594

Query: 519 TPIS 530
            P++
Sbjct: 595 APLA 598


>AF298215-1|AAG30223.1| 2130|Drosophila melanogaster DNA polymerase
           zeta catalyticsubunit protein.
          Length = 2130

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 372 IEGNDDKYKAVSVSQELATPRESKSKKPHTPSWLPVMPNSSH 497
           I+G DD+ +   +    +  + S SK P TP     +P S H
Sbjct: 543 IDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLPKSPH 584


>AE013599-501|AAF59191.2| 2130|Drosophila melanogaster CG1925-PA
           protein.
          Length = 2130

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +3

Query: 348 KASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTP---SWLPVMPNSSHLDAVPQA 518
           KAS     I+G DD+ +   +    +  + S SK P TP     LP  P +    A  + 
Sbjct: 535 KASSKLPQIDGADDRLQRTPIKSISSKSKSSPSKTPTTPIGQKSLPKSPRTPKTSAAKKY 594

Query: 519 TPIS 530
            P++
Sbjct: 595 APLA 598


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,692,961
Number of Sequences: 53049
Number of extensions: 613188
Number of successful extensions: 1688
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)