Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21o06
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 1.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 2.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 2.0
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 27 2.6
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 3.5
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 3.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.5
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 26 3.5
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 4.6
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 4.6
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 26 4.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 4.6
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 6.1
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 25 8.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.0
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 59 QIIETN--NYDQFERTNRTPFIFLELPRPPRR 148
QI+ T+ Y++FE T +T I+LE+ R R+
Sbjct: 1640 QILSTHLVGYEKFENTKKTAEIYLEIARISRK 1671
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 9 LSNHHKNALNFFVDHYFKSLRRITMTSLNEQIEHP 113
+S + N +F F +L+ I+ +LNE IE P
Sbjct: 406 ISRNQSNLSSFQQQQQFSALQSISNNALNENIEQP 440
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 225 KMRRICKSVPQRSNKVLDLSMNRMDNRLGGRGNSRKMKGVRFVRSNWS 82
+ + + +S S ++ MNR D+R+GGRG++ F S+WS
Sbjct: 1268 RKKALAESQRPSSGRMHGRDMNRGDSRMGGRGSNPP-----FSSSDWS 1310
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 77 NYDQFERTNRTPFIFLELPRPPRRLSILF 163
N E+ NR P + LEL PRRL ILF
Sbjct: 101 NIGTSEKKNRLPDL-LELSSSPRRLPILF 128
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 234 LLRKMRRICKSVPQRSNKVLDLSM-NRMDNRL 142
+L+++ CKSVPQ N ++ L + NR D+ +
Sbjct: 466 ILQELGEPCKSVPQEDNCLVTLPLYNRWDSSI 497
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 260 PIKLKVSQDYYEKCGVYASQSHSEVIKF 177
PI +KV + KC VYA H ++F
Sbjct: 1221 PIPIKVISAHASKCNVYAKALHYTELQF 1248
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +3
Query: 309 RKKVRRVQMNQQRLVSTQERTEKQLKRSRQSTGIITGLRGTLSMDETPTHSLLAICENET 488
R+K+ + LVS+++ E QS+ +T +G ++ P+ S+ + +
Sbjct: 643 RRKLLKSFQEVAPLVSSKKMNENLKAAKNQSSESLTSFKGHTDSEDLPSGSMSNEISSNS 702
Query: 489 TKYPTYCSS 515
TK SS
Sbjct: 703 TKQDVSSSS 711
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +3
Query: 261 SLDGLQQKIDYYSNLVRKKVRRVQMNQQRLVSTQERTEKQLKRSRQSTGIITGLRGTLS 437
SL+ + + ++ L+ K+ + +Q + S QE+ + LKR ++ + + R +S
Sbjct: 62 SLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEELDHYRAIIS 120
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 12 SNHHKNALNFFVDHYFKS 65
S+HHKN +NF ++KS
Sbjct: 437 SHHHKNIVNFIDTFFYKS 454
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 4.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +3
Query: 474 CENETTKYPTYCSSQHAIEF 533
C N T YCS +H ++F
Sbjct: 184 CSNPTRPNSNYCSDKHGVDF 203
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 20 SQKCSKFFC*SLFQIIETNNYDQFERTNRTPFIFLE 127
S K S FF +L ++ N+D +TN PF E
Sbjct: 4 SLKSSLFFMLALLTVVHALNFDIPAKTNPEPFCLRE 39
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 111 PSFFWNCLALQDDCPFYSSIDPKLYY 188
PSF + CL LQ+ P +++ DP L Y
Sbjct: 396 PSFSY-CLELQNFLPVFNAQDPNLRY 420
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 6.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 84 TSLNEQIEHPSFFWNC 131
T L + +P FFWNC
Sbjct: 246 TYLKTSLTNPKFFWNC 261
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 509 TICWIFRSFIFTNGQQRMCRSLIHR-QSSS*SGDNSRTLATSF 384
++C + F GQ+ M + LIHR ++S S DN ++ F
Sbjct: 105 SVCPAKFALYFRCGQETMLKRLIHRGKTSGRSDDNIESIKKRF 147
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 8.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 288 QFFVVSHQATNKIEGQPGLLRKMRRICKSVPQR 190
QF V ++ N+I GQP L+K R KS+ R
Sbjct: 303 QFHVATYM-DNEIAGQPQALQKSGRPLKSIRAR 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,406
Number of Sequences: 5004
Number of extensions: 54145
Number of successful extensions: 172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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