Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21o06
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0657 + 25938382-25938443,25938511-25938718,25939222-259392... 31 0.88
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 29 2.7
06_03_0911 + 25889333-25889597,25891464-25892038,25892201-258925... 29 2.7
11_06_0289 - 21969248-21973516 28 4.7
11_06_0185 + 21018045-21022307 28 4.7
11_06_0078 - 19854185-19856170 28 6.2
03_03_0100 + 14411807-14412100 28 6.2
07_01_0785 + 6095041-6095135,6095455-6095760,6098458-6098554,609... 27 8.2
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 27 8.2
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 27 8.2
>11_06_0657 +
25938382-25938443,25938511-25938718,25939222-25939268,
25939473-25939805,25940529-25940613,25940689-25940884,
25941012-25941182,25941261-25941318,25941429-25941657,
25942296-25943183
Length = 758
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 357 TQERTEKQLKRSRQSTGIITGLRGTLSMDETPTHSLLAICENETTKYPTYCSSQHAIEF 533
T+E Q S ++ L+G+ SM +P + L + EN T + S QHA F
Sbjct: 276 TEEMNVHQEHESFHTSNGNCYLKGSCSMQPSPAPANLPVSENHTEQIDIQLSKQHASRF 334
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -2
Query: 272 AIKRPIKLKVSQDYYEKCGVYASQSHSEVIKFWIYR*IEWTIVLEGEAI 126
A+KR I + +++ E+ +++ +H V+KF Y E T++L E I
Sbjct: 63 AVKRYIHTDLRKEFMEEVSIHSKINHKNVVKFIGYSTGENTLMLVTEFI 111
>06_03_0911 +
25889333-25889597,25891464-25892038,25892201-25892580,
25892667-25892753,25892812-25893181,25893352-25893762,
25893845-25893904,25894013-25894219
Length = 784
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 481 FSQMASKECVG--VSSIDKVPLNPVIIPVLWRLLFSCFSVLSCVDTNL 344
F A C V+SI +N P+L+ LL S +++C+ T L
Sbjct: 301 FGSYAESSCAALVVASISSFGINHEFTPMLYPLLISSVGIIACLITTL 348
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 239 QDYYEKCGVYASQ 201
QDYY+KCG+Y S+
Sbjct: 306 QDYYKKCGIYRSK 318
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -2
Query: 239 QDYYEKCGVYASQ 201
QDYY+KCG+Y S+
Sbjct: 306 QDYYKKCGIYRSK 318
>11_06_0078 - 19854185-19856170
Length = 661
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2
Query: 272 AIKRPIKLKVSQDYYEKCGVYASQSHSEVIKFWIYR*IEWTIVLEGEAI 126
A+KR I+ + +++ E+ ++A SH ++K Y E T+++ E I
Sbjct: 50 AVKRYIRGDLREEFMEEVRIHAQMSHKNIVKLIGYCIGENTLMMVTEFI 98
>03_03_0100 + 14411807-14412100
Length = 97
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 413 HRIKRNFVDG*DSDTFFAGH 472
HR +R+F G D D FFA H
Sbjct: 76 HRQRRDFYSGPDVDAFFAAH 95
>07_01_0785 +
6095041-6095135,6095455-6095760,6098458-6098554,
6098943-6098999,6099202-6099751,6099922-6100234,
6100245-6100335,6101002-6101469
Length = 658
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 384 KRSRQSTGIITGLRGTLSMDETPTHSLLAICENETTKYPTYCSSQHAIE 530
++ + G+I RG + MD+ H + ++ T+ T+C+ QH I+
Sbjct: 184 EKVEEDMGLIQYARG-IFMDQHGIHMKPTLSQHSTSNPVTHCTHQHPIQ 231
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 432 LSMDETPTHSLLAICENETTKYPTYCS-SQHAI 527
L +DET HS L CE+ +P Y + +H I
Sbjct: 280 LDLDETLVHSTLEPCEDADFAFPVYFNFREHTI 312
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -3
Query: 244 SARIITKNAAYMQVSPTAK**SFGSIDE*NGQSSWRARQ---FQKNEGCSICSFKLVI 80
+ R+++ +QV P K F ++ G+ ++++ FQKNEG +C F + +
Sbjct: 702 TVRVVSSADRTLQVQPRFK--DFFKKEQYPGEFPYKSKAILLFQKNEGVDVCLFAMYV 757
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,150
Number of Sequences: 37544
Number of extensions: 298997
Number of successful extensions: 814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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