Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o05
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   0.62 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.4  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   1.4  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   2.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   5.8  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   5.8  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   5.8  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    25   5.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.7  

>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 158 DAKKVLPQKVRGYVVNNLWNLTMKTLVNTQVSNININ 268
           DAKK L   +RG+  +N      KT++N + SN  IN
Sbjct: 753 DAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIIN 789


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 211  QIVYDITSNFLWEYFFRVKWPLIT 140
            Q++ D  +N LW+Y F + W +++
Sbjct: 2472 QMLSDADANKLWQYIFPLAWKILS 2495


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 184 SSRLCRKQFVESDYENISKYTGVKH*-HKYLKKGAVPSIFSWNMKPVSEETKS 339
           S+    ++ V S+ +  SK  G KH  H   KKG    +F + +   ++ TKS
Sbjct: 479 STAATNEESVVSNEDRTSKKAGKKHHRHHKKKKGGNKRVFGFKLHKYAKPTKS 531


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 112 IDVLQFLSILAQNNASL 62
           + +LQFLSIL QNN  +
Sbjct: 275 VKILQFLSILGQNNPKI 291


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 175 EYFFRVKWPLITVFQFSCPSGIDVLQFLSILAQ 77
           E+F RV     T   F CP GI   + + +LA+
Sbjct: 293 EFFLRVYRDDRTSVSFICPIGIQTHEVIKLLAR 325


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -3

Query: 181 LWEYFFRVKWPLITVFQFSCPS--GIDVLQFLSILAQ 77
           LW     + W L+T+F F+  S   + +L+F   +A+
Sbjct: 98  LWFSVMNILWGLMTIFSFAVHSVRALMILRFFMAVAE 134


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 7   SHNIQYLYWNF*LKIILSTMTRCFVPICSEIG 102
           SH ++Y+     L I +  +TR   PIC + G
Sbjct: 190 SHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/61 (22%), Positives = 29/61 (47%)
 Frame = -3

Query: 196 ITSNFLWEYFFRVKWPLITVFQFSCPSGIDVLQFLSILAQNNASLCLK*FLIKNSNTNIE 17
           +T +FL E  F      I + Q    +   +   LS +  N +S+C++  + + S + ++
Sbjct: 183 LTDDFLAESVFPPSLKSINITQCPLLTDAGIFSLLSKIGPNLSSVCVQYPMPELSRSGLD 242

Query: 16  C 14
           C
Sbjct: 243 C 243


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 346 LLYFLFLQKLVSYSMKI*MVQHLSSDIYVNV*HLC--IY*CFHSQIPQIVYDITSNFLWE 173
           LL+F+   K+ +Y +   ++    SD+ +N   L   ++ CF+       Y     F++E
Sbjct: 173 LLFFMINSKITNYDLPFSILNSPCSDLCLNSSSLANYLHGCFYHNTLSHPYQDALKFIYE 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,671,816
Number of Sequences: 5004
Number of extensions: 34367
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)