Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21o04
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 318 5e-88
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 161 8e-41
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 28 1.1
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 2.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 4.3
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 5.7
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 10.0
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 318 bits (781), Expect = 5e-88
Identities = 145/195 (74%), Positives = 169/195 (86%)
Frame = +2
Query: 89 LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 268
LT+++TDMET YD+G KMIDSL KEKV AGDVI+IDK+ G++ KLGRSF+RARDYDA G
Sbjct: 155 LTIRSTDMETVYDLGTKMIDSLTKEKVLAGDVISIDKSVGRVTKLGRSFSRARDYDAMGA 214
Query: 269 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 448
RFVQCP+GE+QKRKEVVHTV+LH++DVINSRT GFLALFSGDTGEIK E+REQIN+KV
Sbjct: 215 DTRFVQCPQGEIQKRKEVVHTVSLHDIDVINSRTQGFLALFSGDTGEIKPEVREQINTKV 274
Query: 449 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 628
+EWREEGKAE++PGVLF+DE HMLDIECFSF NRALE + APIVIMA+N Y
Sbjct: 275 SEWREEGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGITRIRGTNY 334
Query: 629 RSPHGIPLDLLDRMI 673
RSPHGIP+DLLDRM+
Sbjct: 335 RSPHGIPVDLLDRML 349
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 161 bits (391), Expect = 8e-41
Identities = 88/203 (43%), Positives = 126/203 (62%), Gaps = 8/203 (3%)
Frame = +2
Query: 89 LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 268
L LKT + + +SL +E+V GDVI I+ TG + ++GRS A A ++D +
Sbjct: 160 LGLKTHKGTKQLKLDPSIYESLQREQVSTGDVIYIEANTGAVKRVGRSDAYATEFDLEAE 219
Query: 269 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS-------GDTGEIKSEIR 427
+ +V P+GE+ KRKE+V VTLH++D+ N+R G + S EI ++R
Sbjct: 220 E--YVPMPKGEVHKRKEIVQDVTLHDLDIANARPQGGQDIMSMMGQLMKPKKTEITDKLR 277
Query: 428 EQINSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATN-XXX 604
+IN V ++ E+G AE+IPGVLFIDE HMLDIECF++LN+ALES +PIVI A+N
Sbjct: 278 GEINKVVNKYIEQGIAELIPGVLFIDEVHMLDIECFTYLNQALESTISPIVIFASNRGIC 337
Query: 605 XXXXXXXYRSPHGIPLDLLDRMI 673
++PHGIP DLLDR++
Sbjct: 338 TIRGTEDIQAPHGIPTDLLDRLL 360
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -1
Query: 489 PGIISAFPSSLHSATLLLICSRISDLISPVSPENSA 382
PG P S+HS T + S S SP+SP NSA
Sbjct: 204 PGFSGLTPFSIHSPTASSVRSCQSIYGSPLSPPNSA 239
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 122 YDMGAKMIDSLLKEKVQAGDVITIDKATGK-INKLGRSFARARD-YDATGQQARFVQCP 292
Y + + D LK+KV A D T+DKA + I L + A+D ++A ++ V P
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANP 603
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 471 FPSSLHSATLLLICSRISDLISPVSPENSARKPWV 367
F +++ IC SD +S +S NSA+ P+V
Sbjct: 743 FQTTMDDILPCYICESSSDSLSVISRSNSAKLPYV 777
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 386 LFSGDTGEIK--SEIREQINSKVAEWREEGKAEMIPGVLFIDEAHML 520
L S D G + S+ R + ++ +E + P +LF+DE H+L
Sbjct: 240 LLSLDVGSLVAGSKFRGEFEERIKSVLKEVEESETPIILFVDEMHLL 286
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 302 LQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 448
LQ ++++ TV ++ +++ G + +++ +TGE + NS+V
Sbjct: 425 LQGHEDLIRTVRFNDEKIVSGGYDGTVRIWNFNTGEQHCVLHNSRNSRV 473
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.0 bits (52), Expect = 10.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 YDMGAKMIDSLLKEKVQAGDVITIDKATGK-INKLGRSFARARD 250
Y + + D LK+KV A D IDKA + I L + A+D
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKD 588
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,940
Number of Sequences: 5004
Number of extensions: 42771
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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