Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21o04
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0608 - 4399252-4399894,4401640-4402427 309 2e-84
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418... 171 4e-43
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 169 1e-42
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 165 4e-41
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 5.9
07_03_0393 - 17630097-17630367,17630483-17630709 28 5.9
03_04_0243 + 19298293-19299117 28 5.9
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 309 bits (758), Expect = 2e-84
Identities = 140/195 (71%), Positives = 168/195 (86%)
Frame = +2
Query: 89 LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 268
LTLKTTDMET Y++G KMI++L KEKVQ+GDV+ +DKA+GK+ KLGRS R+RDYDA G
Sbjct: 171 LTLKTTDMETVYELGGKMIEALGKEKVQSGDVVALDKASGKVTKLGRSIGRSRDYDAVGP 230
Query: 269 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 448
+FV+CPEGELQKRKEVVH VTLHE+DVINSRT GFLALF+GDTGEI++E+REQI++KV
Sbjct: 231 HTKFVKCPEGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRAEVREQIDTKV 290
Query: 449 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 628
AEWREEGKAE++PGVLFIDE HMLDIECFSFLNRALE++ API+++ATN Y
Sbjct: 291 AEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVIATNRGITSIRGTNY 350
Query: 629 RSPHGIPLDLLDRMI 673
RSPHGIP D LDR++
Sbjct: 351 RSPHGIPPDFLDRLL 365
>07_01_0564 -
4183441-4183530,4183683-4183752,4183972-4184063,
4184141-4184240,4184372-4184478,4184703-4184768,
4184879-4185013,4185653-4185808,4186113-4186262,
4186426-4186557,4187604-4187693
Length = 395
Score = 171 bits (416), Expect = 4e-43
Identities = 90/200 (45%), Positives = 126/200 (63%), Gaps = 7/200 (3%)
Frame = +2
Query: 95 LKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQQA 274
LKT + + D+L+KEKV GDVI I+ +G + ++GR A A +YD ++
Sbjct: 101 LKTVKGTKQLKLDPTIYDALIKEKVSVGDVIYIEANSGAVKRVGRCDAFATEYDLEAEE- 159
Query: 275 RFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS--GDT-----GEIKSEIREQ 433
+V P+GE+ K+KE+V VTLH++D N++ G + S G EI ++R++
Sbjct: 160 -YVPIPKGEVHKKKEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITEKLRQE 218
Query: 434 INSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXX 613
IN V + +EG AE++PGVLFIDE HMLDIECFS+LNRALES +PIVI+ATN
Sbjct: 219 INKVVNRYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNV 278
Query: 614 XXXXYRSPHGIPLDLLDRMI 673
SPHGIP+DLLDR++
Sbjct: 279 RGTDMTSPHGIPVDLLDRLV 298
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 169 bits (412), Expect = 1e-42
Identities = 89/200 (44%), Positives = 126/200 (63%), Gaps = 7/200 (3%)
Frame = +2
Query: 95 LKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQQA 274
LKT + + D+L+KEKV GDVI I+ +G + ++GR + A +YD ++
Sbjct: 161 LKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRCDSFATEYDLEAEE- 219
Query: 275 RFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFS--GDT-----GEIKSEIREQ 433
+V P+GE+ K+KE+V VTLH++D N++ G + S G EI ++R++
Sbjct: 220 -YVPIPKGEVHKKKEIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQE 278
Query: 434 INSKVAEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXX 613
IN V + +EG AE++PGVLFIDE HMLDIECFS+LNRALES +PIVI+ATN
Sbjct: 279 INKVVNRYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESPLSPIVILATNRGICNV 338
Query: 614 XXXXYRSPHGIPLDLLDRMI 673
SPHGIP+DLLDR++
Sbjct: 339 RGTDMTSPHGIPVDLLDRLV 358
>07_03_1041 +
23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 165 bits (400), Expect = 4e-41
Identities = 96/195 (49%), Positives = 123/195 (63%)
Frame = +2
Query: 89 LTLKTTDMETNYDMGAKMIDSLLKEKVQAGDVITIDKATGKINKLGRSFARARDYDATGQ 268
LTLKTTDMET ++G KMI++L KEK+Q+GD + + + L A RDYDA
Sbjct: 84 LTLKTTDMETVDELGGKMIEALGKEKLQSGDGCGLREGD-QAWPLNWEVAGCRDYDAVCP 142
Query: 269 QARFVQCPEGELQKRKEVVHTVTLHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKV 448
Q + V+CPEGELQK T GFLALF+GDTGEI++E REQI++KV
Sbjct: 143 QTKSVKCPEGELQK-------------------TQGFLALFTGDTGEIRAEAREQIDTKV 183
Query: 449 AEWREEGKAEMIPGVLFIDEAHMLDIECFSFLNRALESETAPIVIMATNXXXXXXXXXXY 628
AEWREEGKAE++P DIECFSFLNRALE++ PI+++ATN Y
Sbjct: 184 AEWREEGKAEIVP-----------DIECFSFLNRALENDVTPILVIATNRGITSIRGINY 232
Query: 629 RSPHGIPLDLLDRMI 673
+S HGIP D L+R++
Sbjct: 233 QSLHGIPPDFLNRLL 247
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/84 (25%), Positives = 40/84 (47%)
Frame = +2
Query: 338 LHEVDVINSRTHGFLALFSGDTGEIKSEIREQINSKVAEWREEGKAEMIPGVLFIDEAHM 517
+ +++V+ S + LF G + ++ + VAE R+ M+P +L +DE H
Sbjct: 328 VEQLEVLKSWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDT--LLMVPSLLILDEGHT 385
Query: 518 LDIECFSFLNRALESETAPIVIMA 589
I+ L A + +T V+M+
Sbjct: 386 PSIDETDMLQSARKVQTPCKVVMS 409
>07_03_0393 - 17630097-17630367,17630483-17630709
Length = 165
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 553 RAIEEREALNVQHVSLIDE*HPRNHFCLPLLSPLSHLTVNLLPNLRFNLARVAGEQCQEA 374
R +E++ V + ++DE P + CL SPLS L + PNL + A C
Sbjct: 65 RVVEQKGDGRVSILYVLDENVPIFYLCLSSFSPLSLLMLLSDPNLGADNASPLLSDCTGE 124
Query: 373 VGP 365
V P
Sbjct: 125 VVP 127
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = +3
Query: 489 GCYSSMRLTCW-----TLSASRSSIARWNRKPLPS*SWRRIEGSPGYGVPLTAARTAYRW 653
GC+ L W T S SR+ A W P+ SW R P P + R
Sbjct: 158 GCFVVRELLRWGHPVVTDSLSRAPGAAWAAAMAPT-SWSRTSAPPASSSPTSPRRARSSL 216
Query: 654 TCS 662
TCS
Sbjct: 217 TCS 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,045
Number of Sequences: 37544
Number of extensions: 353186
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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