Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o04
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.12 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.0  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 628  VSGTPYPGDPSIRRHDHDGSGFRFQRAIEE 539
            VSG+P P  P  R HD + S F   +   E
Sbjct: 1853 VSGSPEPPPPPPRNHDQNNSSFNDSKESNE 1882


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 229 PAELVYFACSLVYGDHISGLNLLFKQRINHFGSHVVV 119
           PA+LV +AC++V G  +S  N ++   +   GS+  V
Sbjct: 528 PADLVVYACNVV-GSGLSHGNWIYPASMTIPGSNSAV 563


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 507 RLTCWTLSASRSSIARWNRK-PLPS*SWRR 593
           RLTC     SR+++   NRK P P+ +W++
Sbjct: 372 RLTCRKCFKSRTNLDPSNRKLPAPA-NWKK 400


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 580 DHGDESRDHPDTGYHLPQPARHTAG 654
           DHGD +    +  + +  P  H+ G
Sbjct: 340 DHGDHAPKQTEVRFKVHDPKAHSKG 364


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 580 DHGDESRDHPDTGYHLPQPARHTAG 654
           DHGD +    +  + +  P  H+ G
Sbjct: 340 DHGDHAPKQTEVRFKVHDPKAHSKG 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,959
Number of Sequences: 438
Number of extensions: 2964
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)