Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o03
         (223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    26   0.59 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    24   2.4  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    23   4.1  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    23   5.5  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   7.2  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    23   7.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   7.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    22   9.5  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    22   9.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    22   9.5  

>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 4   FSXECWLHNVSKLTSKKKYIYEXNYVDFLQYLFX*KYXNSVLMLLNNKNVTLKFFNLSKL 183
           F   C+   + K    +K + E  +VDF   L      N+V  +LN+K ++    N++ +
Sbjct: 83  FVDYCYYKKILKNKDFRKLLNENLHVDFPADLTEDAQRNTVARILNSKQLSDAIRNINSI 142

Query: 184 I 186
           +
Sbjct: 143 L 143


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 88   KNLHNXVHKYTFFYLSILTH 29
            +N+ N  HK+T F+   LTH
Sbjct: 1091 RNVSNDEHKHTLFHGQSLTH 1110


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +1

Query: 22  LHNVSKLTSKKKYIYEXNYVDFLQYLFX*KYXNSVLMLLNNKNVTLKF 165
           +HNVSK     KY Y     + ++++   +    ++ +     +TL+F
Sbjct: 31  VHNVSKSPEYSKYSYSRKNNEPIEFIQLREEEGPIVKVEEEDGLTLRF 78


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 160 KFFNLSKLINNKIVHYRYK 216
           KFF  S  I + I+H R+K
Sbjct: 409 KFFETSSDIESPIIHLRFK 427


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 181 ILRD*KISALHFCYLITLILNYXIFNXKDIAKNLH 77
           +L + KI  +H C +   + N   +N  DIA +++
Sbjct: 779 LLNEAKIQIMHACLIDVCLKNRDRYNIFDIAFHIN 813


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 145 CYLITLILNYXIFNXKDIAKN 83
           CY+  L   Y  +N +D+AKN
Sbjct: 213 CYVKALDGAYANYNVRDVAKN 233


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 118 NSVLMLLNNKNVTLKFFNLSKLINNKIVH 204
           N  +  L  +N   KF N    +NN+I+H
Sbjct: 150 NRPVDFLRLRNAISKFTNSGSSLNNEILH 178


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 64  YEXNYVDFLQYLFX*KYXNSVLMLLNNKN 150
           ++ N+ D  QYL   +  +S L ++ NKN
Sbjct: 152 FKPNFHDKRQYLLFARALSSALDIIPNKN 180


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 182 NFERLKNFSVTFLLFNNINT 123
           N + +KN +   L FNNI T
Sbjct: 99  NLDNVKNLTYLDLSFNNIKT 118


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 53  FLLVNFDTLCSQH 15
           FLL  FD LCS H
Sbjct: 128 FLLSLFDLLCSHH 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,871
Number of Sequences: 5004
Number of extensions: 9762
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)