Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o03
         (223 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    25   7.3  
AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 157 ALHFCYLITLILNYXIFNXKDIAKNLHN 74
           AL F  L+TL+ +  +F+    A+N HN
Sbjct: 61  ALSFSDLLTLVASIFVFSVPVYAENSHN 88


>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 124 VLMLLNNKNVTLKFFNLSKLINNKIVHYR 210
           VL++ N+ N T+K  NLS   N+K V  R
Sbjct: 491 VLVIQNHNNFTIKDVNLSLKTNDKNVIIR 519


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 106 NXKDIAKNLHNXVHKYTFFYLSILTHCAANIPXRI 2
           N   +   LH+ + KY    + I+  CA  +P R+
Sbjct: 49  NLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRV 83


>AF068710-2|AAC17770.1|  476|Caenorhabditis elegans Hypothetical
           protein T06A1.5 protein.
          Length = 476

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 121 SVLMLLNNKNVTLKFFNLSKLINNKIVHYRYKI 219
           ++L + N+KN  +   N +KLI+ K   Y++ +
Sbjct: 180 TMLGITNSKNEPISTENSAKLIHRKFKEYQHNV 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,955,360
Number of Sequences: 27780
Number of extensions: 54104
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)