Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21o03
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   0.59 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   5.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   5.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   5.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   5.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
          protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 0.59
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 40 LTSKKKYIYEXNYVDF 87
          LT+  K IYE  Y+D+
Sbjct: 25 LTNSLKVIYEWKYIDY 40


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
          RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 28 NVSKLTSKKKYIYEXNYVDF 87
          + + L    K IYE  ++DF
Sbjct: 29 SANNLAHSMKVIYEWKHIDF 48


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 22  LHNVSKLTSKKKYIYEXNYVDFLQ 93
           +H   +LTSK        Y+ FL+
Sbjct: 592 VHTFGRLTSKHDNSLYDEYIPFLE 615


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = -1

Query: 145 CYLITLILNYXIFNXKDIAKNLHNXVHK 62
           C++   +L +   N     + +HN V++
Sbjct: 372 CFIYASLLEFVCVNYVGRKRPMHNVVYR 399


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = -1

Query: 145 CYLITLILNYXIFNXKDIAKNLHNXVHK 62
           C++   +L +   N     + +HN V++
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = -1

Query: 145 CYLITLILNYXIFNXKDIAKNLHNXVHK 62
           C++   +L +   N     + +HN V++
Sbjct: 392 CFIYASLLEFVCVNYVGRKRPMHNVVYR 419


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 6/28 (21%), Positives = 14/28 (50%)
 Frame = -1

Query: 145 CYLITLILNYXIFNXKDIAKNLHNXVHK 62
           C++   +L +   N     + +HN V++
Sbjct: 341 CFIYASLLEFVCVNYVGRKRPMHNVVYR 368


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 163 ISALHFCYLITLILNYXIFNXKDIAKNLHNXVHKYTF--FYLSILT 32
           +S +  CYL+T  L   +    DI   +      + F   Y ++LT
Sbjct: 699 LSGILLCYLVTFAL---VLRPTDIVCGIQRFAAGFCFTVVYAALLT 741


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,495
Number of Sequences: 438
Number of extensions: 801
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)