Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n24
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    28   0.69 
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    27   0.91 
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    25   3.7  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   4.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.4  

>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 9   KTVXTKYFFIFKHCCFRYYSNFIS 80
           K V T+YFF +   C   Y NF++
Sbjct: 337 KNVQTEYFFCYVGICIGVYGNFVA 360


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 0.91
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 84  HTYPKKSSLIMDKGQEQVKKPF 149
           HTYP  SSLI D    +V+ PF
Sbjct: 8   HTYPAVSSLIADLKSRKVQGPF 29


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7   QKPSKRNIFSF-SNIAVFVTIQILFQYIP-TQKSQV*LWI 120
           Q PS R      SN+  F++IQ L +Y+P T   +V  WI
Sbjct: 113 QAPSDRTWSRMVSNLFAFISIQFLNRYLPNTTAVKVVSWI 152


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 264 KMFYGHVFCNGC-----FKQHVLDRFRGECPSVHTNWAQWTCGKF 383
           K  YG VF N       FK+HV++   G+C        QW+  ++
Sbjct: 100 KYHYGWVFLNNEEFSDEFKEHVIEAVSGKCEFGLVPQEQWSIPEY 144


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 261 VKMFYGHVFCNGCFKQHVLDRFR 329
           +K FYGHV  N  F    L R+R
Sbjct: 265 IKSFYGHVQANFFFFHETLLRYR 287


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 234  NTCSKFDESFALLFQWCLQNPQVKN-IEHKMAF 139
            N C    ESF +L   C++  + +N +E+K+ F
Sbjct: 1237 NECLPIKESFIVLLGSCIKQLKTENFLEYKVTF 1269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,551
Number of Sequences: 5004
Number of extensions: 33798
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)