Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n24
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583     28   3.6  
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135...    27   4.7  
06_03_1332 - 29403320-29407804                                         27   8.2  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     27   8.2  
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257...    27   8.2  

>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
          Length = 602

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 272 EHLHRRRNCSADATRAANSMKALPCYFNGVFRIHR*KTSSTKWL 141
           E  H R  CS  AT  A ++  +PC +     I    + +  WL
Sbjct: 8   ETTHNRAYCSEAATAIAVAVAVVPCIYRRATEISHKYSGAAHWL 51


>01_06_0742 -
           31611005-31611843,31611930-31612092,31613463-31613538,
           31613615-31613731,31613852-31614016,31614100-31614190,
           31614824-31614908,31615013-31615195,31615748-31615996
          Length = 655

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 362 GPVCVDRWTFASKPI*HVLLEASIAEYVPVEHL 264
           GPVC D W   + P+  +    S   Y+P  HL
Sbjct: 20  GPVCRDLWHACAGPVVSLPRRGSAVVYLPQGHL 52


>06_03_1332 - 29403320-29407804
          Length = 1494

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 277 GTYSAMDASSSTC*IGLEANVH 342
           GTY A D  +S C +GL  N H
Sbjct: 97  GTYEAADEHASGCLLGLVLNAH 118


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -3

Query: 323 PI*HVLLEASIAEYVPVEHLHRRRNCSA-DATRAANSMK 210
           P  H LL  S     P  H HRRR C A    RA+ S K
Sbjct: 18  PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAK 56


>01_01_0320 -
           2578911-2579144,2579243-2579455,2579580-2579858,
           2579961-2580050,2580258-2580439,2581366-2582470
          Length = 700

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 39  FKHCCFRYYSNFISIHTYPKKSSLIMDKGQEQVKKP-FCARCFLPVDSED 185
           F++ C R Y N      Y  K++ ++   QE++KKP +     + VD ED
Sbjct: 577 FQNACKRKYGN----DDYETKAAELVSSWQEEIKKPSWHPYKIITVDGED 622


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,234,050
Number of Sequences: 37544
Number of extensions: 214058
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)