Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n24
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          20   10.0 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   10.0 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   10.0 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      20   10.0 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 233 LRLQNNSVGGEDV 271
           L + NNSVGGE V
Sbjct: 286 LCIVNNSVGGESV 298


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -1

Query: 364 WAQFVWTDGHSPLNRS 317
           W   +WTD H   N S
Sbjct: 57  WVTQIWTDHHLKWNAS 72


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 373 QVHWAQFVWTDG 338
           ++H  +F WTDG
Sbjct: 363 ELHGLKFQWTDG 374


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 27  YFFIFKHCCFRYYSNFIS 80
           YFF+ K    RYY   +S
Sbjct: 258 YFFLHKQVLNRYYLERLS 275


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 47  LLFSLLFKFYFNTYLPKKVKFNY 115
           L F  +  FY+  YL +  + NY
Sbjct: 433 LFFLAINVFYWFAYLSRSERINY 455


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -1

Query: 364 WAQFVWTDGH 335
           W   +WTD H
Sbjct: 94  WMTLMWTDSH 103


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 27  YFFIFKHCCFRYYSNFIS 80
           YFF+ K    RYY   +S
Sbjct: 258 YFFLHKQVLNRYYLERLS 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,256
Number of Sequences: 438
Number of extensions: 2465
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)