Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n10
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    28   1.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   1.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   5.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    25   5.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   7.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.6  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   9.6  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   9.6  

>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 16  SVLLYANYKISKIYRKYQTFYLLGDFIRCLTVAQV 120
           ++L Y N   +  Y   + F LLG F+ CL   +V
Sbjct: 468 AMLNYLNKSFNSYYHAARCFLLLGQFLSCLPAPKV 502


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 382  YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK 528
            +I CVL +G        +    K +G Q  C  C D  K    +++KH+K
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLK 1385


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 10  LFSVLLYANYKISKIYRKYQTFYLLGDFIRCLTVAQVAAQLCSCSD 147
           +F +LL   Y  SK+Y  Y T+Y++G  +  + V  V  Q  S S+
Sbjct: 229 VFVLLLMGRYT-SKLYIAYTTYYVIGT-LASMQVPFVGFQPVSTSE 272


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 7   SLFSVLLYANYKISKIYRKYQTFYLLGDFIRCLTVAQVAAQLC-SCSD 147
           SLFS    A +   + Y  YQ F    D I C   +  A  L  +CSD
Sbjct: 309 SLFSASALAEWYDQQAYGYYQNFTYTLDLIPCNATSWSAYSLLKNCSD 356


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 286 FVAGLSIAEKYTDKYDNID-VDEILENRKLL 375
           F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 734 FLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 338 MLSYLSVYFSAIDKPATNKSAAIVRHFM 255
           +++ LSVY+S   +   +K   +V+HFM
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFM 567


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 313  KYTDKYDNIDVDEILE 360
            +Y DK D  DVDEI E
Sbjct: 1038 EYIDKLDKYDVDEIAE 1053


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 247 LKVMKCLTIAALLFVAGLSIAEKY-TDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPD 423
           L   K ++ + L++   L ++    T +    D    L+N +L    ++ +L+    TPD
Sbjct: 719 LPTTKPVSASQLIYHRALDLSRNAATSELSGNDAQACLQNYRLAAHLLESLLESNFSTPD 778

Query: 424 G 426
           G
Sbjct: 779 G 779


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 IDVDEILENRKLLVPYIKCVLDEGRCTPD--GKELKAHIKD 453
           I  D IL+    + P I  +LD+GR   +  G E KA  K+
Sbjct: 644 IRTDTILDEEVPVDPLITSILDDGRWWEEMFGSERKAGFKE 684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,924
Number of Sequences: 5004
Number of extensions: 41884
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)