Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n10
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0618 + 19307658-19308584,19308690-19309082                       28   5.6  
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96...    28   5.6  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    27   9.8  

>10_08_0618 + 19307658-19308584,19308690-19309082
          Length = 439

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 340 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 444
           D DEI E+    +PY+K V+ EG R  P G  + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356


>02_01_0135 +
           967172-967229,968316-968657,968936-969015,969063-969698,
           969819-971527,971563-972514,972821-973273,974303-974497
          Length = 1474

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +1

Query: 304 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 483
           +A   + K DN  + E L+  K L+   + V+DE     D   L+ HI+ G  +  A CT
Sbjct: 88  LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143

Query: 484 DKQ 492
           + +
Sbjct: 144 NPE 146


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 28  YANYKISKIYRKYQTFYLLGDFIRCLTVAQVAAQL 132
           YA++  SK YR YQ+++++ D      + ++A+ L
Sbjct: 218 YADHFFSKHYRTYQSYHIVHDIGNIKALQKLASSL 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,044,187
Number of Sequences: 37544
Number of extensions: 265186
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)