Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n09
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    29   0.52 
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    28   0.91 
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    26   4.8  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   4.8  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   6.4  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 307 RFIYFLIFLNEFFRCDLNSTNSVNIVL 227
           +FIYF I +  ++RC++  ++  N++L
Sbjct: 551 KFIYFRICITNYYRCNVRDSSIYNVLL 577


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 28/80 (35%), Positives = 34/80 (42%)
 Frame = +2

Query: 335 WKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYMRTTIDDSPLYIFDSSFG 514
           W AN     D +V      K KC E++D YS      Y   Y R  +DD   YI  SS G
Sbjct: 225 WLANLLKANDEIVTAIDAFKEKCSENSD-YS-SDSGSYSSSYSR-HLDDRASYISRSSSG 281

Query: 515 EHPRRKKLLEDYDVPLYFRD 574
               ++   ED DV   F D
Sbjct: 282 GSNAQRS--EDLDVNNPFGD 299


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 517 LPKTAIKNIQWTIINGGSHIF-YIILHFHLNTIAIIVFTT 401
           +P + +K+I W IING +++    I+H  L    I++  T
Sbjct: 112 IPPSILKSILWQIINGVAYLHENWIMHRDLKPANIMITAT 151


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 24/87 (27%), Positives = 36/87 (41%)
 Frame = -1

Query: 460 IFYIILHFHLNTIAIIVFTTLEFLIPIFFNKSV*SPLVICFPVSLHISYDYRFIYFLIFL 281
           I Y+     L T   I+    E ++P+       SPL+IC    L ++       F IF 
Sbjct: 242 IAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLSLAIP--SAAFAIFF 299

Query: 280 NEFFRCDLNSTNSVNIVLALEELSKVV 200
           N+   C   S   V+  +A E L  +V
Sbjct: 300 NQGEACTAASRLIVHESVADEVLGGLV 326


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 431 KMKMKYYVEYMRTTIDDSPLYIFDSSFGEHPRRKKLLEDYDVPLYFRDDL 580
           K  +K +   M   +D+   + F + F  HP  +K   DYD  +Y   DL
Sbjct: 184 KQSLKKFQSAMLPMLDNISNHRFGAPFS-HPVNRKEAPDYDSLVYKPQDL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,098
Number of Sequences: 5004
Number of extensions: 42328
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)