Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n09
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0206 + 15447054-15447181,15448243-15448298,15448373-154485...    78   6e-15
11_06_0149 - 20636801-20637044,20637859-20639180                       66   2e-11
11_01_0445 - 3455449-3456096,3456348-3457958                           31   0.70 
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128...    28   6.6  
11_01_0044 + 340486-340854,341855-341911,343100-343974,344065-34...    27   8.7  
10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655           27   8.7  

>03_03_0206 +
           15447054-15447181,15448243-15448298,15448373-15448515,
           15448630-15448827,15448901-15449100,15449585-15449684,
           15449769-15450350,15450434-15450556,15451028-15451108,
           15451188-15451495,15451577-15451816,15452261-15452345,
           15452429-15452606,15453053-15453227,15453826-15453982
          Length = 917

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 39/94 (41%), Positives = 52/94 (55%)
 Frame = +2

Query: 305 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYMRTTIDDS 484
           PV++T +   W A  KWT  +L   Y    F+  + +    +KMK+K YV YM    D+ 
Sbjct: 109 PVLLTKLAETWPARTKWTAQQLTHDYGEVPFRISQRSP-QKIKMKLKDYVFYMELQHDED 167

Query: 485 PLYIFDSSFGEHPRRKKLLEDYDVPLYFRDDLFK 586
           PLYIFD  FGE      LLEDY VP  F++D F+
Sbjct: 168 PLYIFDDKFGE--SAPTLLEDYSVPHLFQEDFFE 199


>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 35/99 (35%), Positives = 54/99 (54%)
 Frame = +2

Query: 305 PVVITDVQTNWKANYKWTLDRLVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYMRTTIDDS 484
           PV++     +W A  KWT + L+K    ++F  G       V M +  Y++Y     ++ 
Sbjct: 231 PVLLEGCLESWPALQKWTREHLLKVSAGKEFAVGP------VSMTLDRYLQYADNVQEER 284

Query: 485 PLYIFDSSFGEHPRRKKLLEDYDVPLYFRDDLFKYCGEE 601
           PLY+FD+ F E  +  ++  DY+VP YFR+DLF   GEE
Sbjct: 285 PLYLFDAKFTE--KVPEMGRDYEVPAYFREDLFGVLGEE 321


>11_01_0445 - 3455449-3456096,3456348-3457958
          Length = 752

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -1

Query: 301 IYFLIFLNEFFRCDLNSTNSVNIVLALEELSKVVVVF*YGPL 176
           I+  +F+ +F+RC   S+    I+ +++ELS  +VV+  G +
Sbjct: 35  IFLAMFIIDFYRCRTRSSILTTILESIDELSDQIVVYLIGAM 76


>01_06_1540 -
           38111557-38111985,38112087-38112311,38112494-38112854,
           38112965-38113058,38113136-38113369,38113891-38113945
          Length = 465

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
 Frame = -1

Query: 433 LNTIAIIVFTTLEFLIPIFFNKSV*S-------PLVICFPVSLHISYD 311
           L T+ +I  T +  +IP FFN  +         PL + FP+S+HI+ +
Sbjct: 372 LRTVVVIATTVVAMMIP-FFNAVLGLLGAFSFWPLTVYFPISMHIAQE 418


>11_01_0044 +
           340486-340854,341855-341911,343100-343974,344065-344398,
           345553-345645,345913-346062
          Length = 625

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
 Frame = -1

Query: 475 NGGSHIFYIILHFHLNTIAIIVFTTLEFLIPIFFNKSV*SPLVICFPVSLHI----SYDY 308
           NG S  FY +    L+  +  V+  L  ++P+  +      +++C P   H+     +D 
Sbjct: 185 NGLSAAFYTLFANALSPFSPSVYLLLNAIVPLVVSLVALPAILLCHPHDGHLHVVPKHDK 244

Query: 307 RF---IYFLIFLNEFFRCDLNSTNSVN 236
           R    +Y L F+   +     S N+ N
Sbjct: 245 RIFLGLYLLAFITGIYLVIFGSFNTTN 271


>10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655
          Length = 423

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +2

Query: 368 LVKKYRNQKFKCGEDNDGYSVKMKMKYYVEYMRTTIDDSPLYIFDSSFGEHPRRKKLLED 547
           ++ +Y+   FK G+D     + +       +     +D P Y+F  S+    R  KL+ D
Sbjct: 354 VMHRYQALGFKNGKDACCGYIGLAASVLCNFASPLCNDPPQYVFFDSYHPTERAYKLMVD 413

Query: 548 YDVPLYFR 571
             +  Y R
Sbjct: 414 EVIKRYLR 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,252
Number of Sequences: 37544
Number of extensions: 228334
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)