Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n05
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    31   0.20 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   5.8  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   5.8  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 525  LDFRFPPHLEDFAPI--LQKDFLWTETW 602
            LD   P HL+   PI  L +D+LW ETW
Sbjct: 1352 LDQDLPNHLQHLIPIYSLPQDWLWCETW 1379


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 435 TYYITNINVLSWPQIIIINHSIQNTYTAFGNII--LKLQSDTHYSFESNAESKIQ 277
           TYY  N+N LSW   I   H  QN+ T +   I  + +  D    F +  + K++
Sbjct: 434 TYY--NLNTLSWNLYIEYGHPTQNS-TFYKEFISNISMSDDGRIYFMNTRDIKVR 485


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 503 TERPSYKAGLQVSSTSRRFRPHPAEGLSVDRNMVPCTS 616
           + RPS  A L  S T   FRP  +E +S +    P TS
Sbjct: 320 SSRPSASASLASSPTRSAFRPKTSETVSSEVVSSPPTS 357


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -3

Query: 402 WPQIIIINHSIQNTYTAFGNIILKLQSDTHYSFESNAESK 283
           W  ++     +++  +  GN+ LK  SDT     ++++ K
Sbjct: 396 WQDLVAEEQKVEDIVSTLGNVSLKTPSDTFTLTNTDSDKK 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,016
Number of Sequences: 5004
Number of extensions: 55395
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)