Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21n05
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963...    29   2.6  
07_01_1103 + 10141766-10143583                                         29   4.5  
01_01_0497 - 3664349-3664687                                           28   6.0  

>03_02_0865 -
           11895257-11895340,11896004-11896069,11896297-11896355,
           11896470-11896557,11897158-11897328,11897406-11897564,
           11897653-11897835,11897931-11898012,11898753-11898959,
           11899099-11899170,11901948-11902055,11902460-11902506
          Length = 441

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 489 ISHVEQKDPRIKLDFRFPPHLE 554
           IS  E   PR+ +D+ FPPHLE
Sbjct: 124 ISSAEPIAPRLGVDYPFPPHLE 145


>07_01_1103 + 10141766-10143583
          Length = 605

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
 Frame = -1

Query: 617 WTCMGPCFCPQKVLLQDGG--EIFEMWRKPEVQLYTR---------VFLFNVTNSEEYLA 471
           W     C   +K+L+ DGG  E+  +WRK  +  +           +  + VT+  E  A
Sbjct: 93  WQGQRVCADGEKLLVPDGGGVEVEIVWRKYLLSFFAEGERGSSGWVMHEYAVTSPAELAA 152

Query: 470 NPMNLFHRFFTGH 432
           +P+ L+   F+GH
Sbjct: 153 SPIRLYRVRFSGH 165


>01_01_0497 - 3664349-3664687
          Length = 112

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 524 AGLQVSSTSRRFRPHPAEGLSVDRNMVPCTS 616
           A   V+  +RRFRPH   G   D+ + P  S
Sbjct: 75  AAAAVAFHARRFRPHGGGGFEADKRLAPTGS 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,153
Number of Sequences: 37544
Number of extensions: 350603
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)