Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m24
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    27   1.6  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   8.8  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   8.8  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   8.8  

>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -3

Query: 271 YSISTSTIL--W*AYWTKYLNQNDRAIKLVSKPIKT 170
           Y++  ST+   W A WT   +Q++  I  VS+PI +
Sbjct: 346 YAVDASTLPAEWKATWTNLNDQSNEGIAHVSRPISS 381


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 395 FKKSCETNLVVVNAKKLSIVLLLLR*KRLFINREDHAINTALL 267
           F   CETNL++  A+  +  + L     LF+N    + +T+ L
Sbjct: 104 FSAFCETNLILAVARNFNRAVALHLTSVLFVNSGMWSASTSFL 146


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 119 YHFVYRVSYLKTDITQTSFYWLR 187
           YHF++    L TD+ +   +WL+
Sbjct: 455 YHFIHDKHSLITDVVEIDRHWLK 477


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 167 FALYLFLNKKLDRQSDKELILNIGTNFLFPCNLKHG 60
           F   +FLN      S  +L   +G +F F C+L  G
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHFRFICSLNFG 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,153
Number of Sequences: 5004
Number of extensions: 43247
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)