Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m24
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0092 + 19973364-19975983,19976272-19976648                       28   5.1  
03_03_0034 - 13939907-13939921,13941075-13941200,13941339-139414...    27   8.8  

>11_06_0092 + 19973364-19975983,19976272-19976648
          Length = 998

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 238 LTIISYLSILSNAVLMAWSSRFIKRRFYLSNNNTMDNFFAFTTTRFVSQDFLKLSTMSKS 417
           L  + YLS+ +N++  +  S F K +       T+DN     +  F   +  +L+ M   
Sbjct: 373 LVNLQYLSLANNSLTGSLPSSFSKLKNL--RRLTVDNNKLIGSLPFTIGNLTQLTNMEVQ 430

Query: 418 FKAYKGFIPN 447
           F A+ G IP+
Sbjct: 431 FNAFGGTIPS 440


>03_03_0034 -
           13939907-13939921,13941075-13941200,13941339-13941474,
           13941588-13941806,13942604-13942979,13943134-13943323
          Length = 353

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 131 YRVSYLKTDITQTSFYWLRDELYCS 205
           YR+SY KT   Q S Y+LR+  + S
Sbjct: 299 YRMSYAKTGYKQLSEYYLREAQWSS 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,934
Number of Sequences: 37544
Number of extensions: 218833
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)