Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m24
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/48 (18%), Positives = 25/48 (52%)
 Frame = +1

Query: 370 RFVSQDFLKLSTMSKSFKAYKGFIPNDCYYPGVMLYLPEYKYVGLMVV 513
           R  +++   +S    + K   GF+ N  +  G++++   ++Y+ L ++
Sbjct: 14  RKATKEIHSISDSLVNAKLAFGFLDNSVWADGLLVFYEVFRYLELAMI 61


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/33 (21%), Positives = 19/33 (57%)
 Frame = -2

Query: 257 KYDIMVSILDQISKPERSSNKARLEANKNWFAL 159
           KY +  ++  ++++ +   N   LE +++W +L
Sbjct: 333 KYILKSTLTPKLARKQFQKNTTGLERSRSWSSL 365


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 94  RIFYFHVILSTVSY*ISTQ 38
           +I YFH + S   + +ST+
Sbjct: 253 KILYFHAMSSIAEFSVSTE 271


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 71  DYMEIKNSYLCSELILYHF 127
           + ++IKN   C + I YHF
Sbjct: 212 EVIKIKNFDNCDQRINYHF 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,250
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)