Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m22
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   2.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   2.8  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   3.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   3.7  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    25   3.7  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    24   6.4  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    24   6.4  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    24   8.5  

>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 214 QTSRIWRHSRKSSARAVAFPVFEWG--DTNWYNFS 116
           +TS IW   R++ AR  A   + W   D+ WY+++
Sbjct: 505 ETSAIW--DRRARARRAAMEKYLWSEADSMWYDYN 537


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 102  LIPTNMRMQMSQKYTLKEPILCSFSMLNE 16
            LI + M +  S+KYT   P++ +++ L+E
Sbjct: 1192 LITSRMSVDFSEKYTQLIPVITTYTHLSE 1220


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 20  FNIENEHKMGSLRVY--FCDICILMLVGINYFLL 115
           F I++E ++GS+ +    C + +L L+G  +FL+
Sbjct: 243 FAIKSEGELGSVFLISLICSVLVLCLLGYEFFLV 276


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 159 FRSSNGAILTGTTSASRK*LIPTNMRMQMSQKYTLK 52
           F+  NG   TG+TS +R      + +  + +KY+ +
Sbjct: 104 FQGENGEAKTGSTSLTRSASATVSRKSSLQEKYSTR 139


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  SLRVYFCDICILMLVGINYFLLAEVV 127
           SL  +FC +C++  +G  +  LAE +
Sbjct: 89  SLITFFCKLCVIFGLGFVFTYLAEQI 114


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 201 SGVTVGNPPQEQLPFRSSNGAILTGTTSASRK 106
           +G T  +PP   + F   +G I+TG    S K
Sbjct: 199 AGATFIDPPNPNVNFTQIDGKIVTGVNPQSAK 230


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 157 ERQLLLRRISDCDARSWKS 213
           E +LL+  ISD D   WKS
Sbjct: 660 ELELLIGGISDVDVEDWKS 678


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 273 VLSPS*SHLTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LI 97
           +L P+ + +  ++   +SR     SG  V  PPQ +LP  SS     + T   +R  L+
Sbjct: 171 ILPPNLNSIGNKMFSLKSRVPSSSSGSFVAPPPQMRLPAYSSPQKSRSNTKDENRHNLL 229


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 239 DLVFEKVGADFQDLAS 192
           DLV+  +G+DF DL S
Sbjct: 13  DLVYNTIGSDFLDLPS 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,386
Number of Sequences: 5004
Number of extensions: 28737
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)