Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21m22
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224 31 0.28
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498... 30 0.48
09_04_0598 + 18875270-18875437,18875547-18876179 29 0.85
08_02_1288 + 25902264-25902431,25902506-25903090 28 2.6
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591... 27 4.5
06_03_1237 + 28602250-28604196 27 6.0
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 27 6.0
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 26 7.9
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 26 7.9
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 26 7.9
01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977 26 7.9
>02_02_0144 - 7153464-7153822,7153933-7154837,7155962-7156224
Length = 508
Score = 31.1 bits (67), Expect = 0.28
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 103 LFSTS*SCTS*YRPIRRPERQLLLRRISDCDARSWKSAPTF 225
+F CT P RRP Q +LRR+ C AR W+ P F
Sbjct: 469 VFKLGVECTM-MDPQRRPSMQTVLRRLRQC-ARWWRRFPCF 507
>03_06_0565 +
34747278-34748066,34748170-34748406,34749777-34749869,
34751752-34751988,34752398-34752584,34752956-34753028,
34753145-34753289,34753670-34753779,34754127-34754258,
34754328-34754469,34754545-34754679,34756278-34756435,
34757327-34757401,34757505-34757643,34757838-34757952,
34758016-34758107,34758500-34758613
Length = 990
Score = 30.3 bits (65), Expect = 0.48
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 197 PDPGSLPLLSQTPSLVVKCDQEGDNTCXIL 286
P+P S P+LS PS++ +C Q D C I+
Sbjct: 290 PEPFSRPILSANPSIIARCLQPSD--CFII 317
>09_04_0598 + 18875270-18875437,18875547-18876179
Length = 266
Score = 29.5 bits (63), Expect = 0.85
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -1
Query: 249 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 70
L T G+ + RL +T N + L +S I+ T A+ L T + +S
Sbjct: 36 LRTAAGINSATRRLWAISMTKDNEKKAVLVVQSLRNVIMGSTLVATTAILFCTGIAAVLS 95
Query: 69 QKYTLKEPI 43
YT+K+P+
Sbjct: 96 STYTIKKPL 104
>08_02_1288 + 25902264-25902431,25902506-25903090
Length = 250
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = -1
Query: 249 LTTRLGV*ESRGRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTNMRMQMS 70
L++ +G+ + RL G+ N + L +S I+ T A+ L T + +S
Sbjct: 36 LSSTVGINTATRRLWVLGMMKDNEKKAVLVVQSMRNVIMGSTLMATTAILFCTGVAAILS 95
Query: 69 QKYTLKEPI 43
YT+K+P+
Sbjct: 96 STYTVKKPL 104
>04_04_0671 -
27157692-27158620,27158711-27158828,27158967-27159156,
27159281-27159415,27159537-27159634,27160034-27160206,
27160299-27160772,27161464-27161518
Length = 723
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 32 NEHKMGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDR 157
+E M L Y ICI +LVG ++ +V+ V++ +R
Sbjct: 364 SESSMSGLFGYKSFICIALLVGDGFYNFVKVIVVTLKSVRER 405
>06_03_1237 + 28602250-28604196
Length = 648
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 68 CDICILMLVGINYFLLAEVVPVSIAPFEDRK-GNCSCGGF 184
CD C L + ++ E++ F K G CSCGGF
Sbjct: 608 CDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGF 647
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +2
Query: 44 MGSLRVYFCDICILMLVGINYFLLAEVVPVSIAPFEDRKGNCSCGGFPTVTPDPGSLPLL 223
+ S+ F D L+++ ++ L AE + + A + CGG V P S
Sbjct: 9 VASICAAFYDSIWLLVLLLSTALAAETLDGAQAASSQCQNATKCGGVDIVYPFGLSSSGC 68
Query: 224 SQTPSLVVKCDQEGD 268
+ +PS V C+ G+
Sbjct: 69 AMSPSFEVDCNNTGN 83
>08_02_1257 -
25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 230 FEKVGADFQDLASQSEIL 177
FE++G DF D S+S+IL
Sbjct: 576 FEQIGMDFNDARSKSQIL 593
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 216 GRLPGSGVTVGNPPQEQLPFRSSNGAILTGTTSASRK*LIPTN 88
G P SG G PP QLP A +TS ++ PTN
Sbjct: 1403 GSPPASGSAKGVPPAVQLPSPQQQSAKNPASTSGAKS--APTN 1443
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +2
Query: 197 PDPGSLPLLSQTPSLV--VKCDQEGDNTCXILCNALATA 307
P PGS+ ++P L ++ D + DN+ +CNA+A A
Sbjct: 114 PAPGSV---YRSPQLYARLRADMDADNSTDAICNAVAIA 149
>01_06_1607 + 38605100-38605364,38605415-38605722,38606213-38606977
Length = 445
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 140 APFEDRKGNCSCGGFPTVTPDPGSLPLLS 226
AP +D K S PT P P L LLS
Sbjct: 227 APVQDNKQGSSSTSTPTPPPTPSKLHLLS 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,356
Number of Sequences: 37544
Number of extensions: 192124
Number of successful extensions: 490
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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