Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m19
         (491 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.                30   5.0  
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.                    30   5.0  
AY395768-1|AAR21239.1|  651|Homo sapiens patched protein.              30   5.0  
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros...    30   5.0  
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros...    30   5.0  
AB209495-1|BAD92732.1|  586|Homo sapiens patched variant protein.      30   5.0  

>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
          Length = 1447

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 674 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 727


>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
          Length = 1296

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 523 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 576


>AY395768-1|AAR21239.1|  651|Homo sapiens patched protein.
          Length = 651

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 269 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 322


>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
           (Drosophila) protein.
          Length = 1296

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 523 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 576


>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
           (Drosophila) protein.
          Length = 1447

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 674 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 727


>AB209495-1|BAD92732.1|  586|Homo sapiens patched variant protein.
          Length = 586

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 265 IWQTTRNKRTNITMDPITISS*FKLKLSPQDDASVLFLPISLIFAMLHCTEVHC 104
           ++ TT   R+ I++ P+T++       SP+  +S   L      + LHC E  C
Sbjct: 110 VYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSLHCLEPPC 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,350,095
Number of Sequences: 237096
Number of extensions: 1148871
Number of successful extensions: 2019
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)