Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m19
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    27   7.4  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   7.4  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 304 ICYNVDVIQVLLIAFAFVTLLIVMSWM 384
           IC N+DV+Q L I F  +T+ I+++++
Sbjct: 77  ICRNLDVLQRLPIVFYLITVAILLTYL 103


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 238 FFYFLSFAISRADGKTMGKKDTICYNVDVIQVLLIAFAFVT 360
           F   L + IS     T+       YN   +Q+ LI FAF++
Sbjct: 26  FQIILLYLISHKSPATLDGLKIFLYNTSCVQIALITFAFLS 66


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 285 YGEERHYLLQRRCYTSFADSICLRDSSDCDELDVQVLPG--NLXVIV--PTLRKLEGISN 452
           +G +   LL+R   T+F D + LR       L   +L G  N  V +  PT++ LEG+  
Sbjct: 283 FGTQFEILLKRSLRTTFRDPLLLRVRF-AQILATAILVGIVNWRVELKGPTIQNLEGVMY 341

Query: 453 WCSRNGT 473
            C+R+ T
Sbjct: 342 NCARDMT 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,113,401
Number of Sequences: 27780
Number of extensions: 185825
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)