Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21m18
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 31 0.11
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 28 1.0
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 26 3.1
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 3.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 26 4.1
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 26 4.1
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 5.4
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.4
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 9.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.4
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 162 LTCIKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLS 278
++CI V + +R A KS PL +F + +PSLS
Sbjct: 201 ISCIPRVEDWKRAAADYKKSSIPLGKFSDGETQTMPSLS 239
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 311 SSSSPRYRIPKL*SVQERSIQGCEKDKMGCG 403
S +P Y P++ +Q R GC+ D GCG
Sbjct: 179 SCGTPHYAAPEV--IQGRYYDGCDVDVWGCG 207
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 183 VQFLYKLNSDSTARSKD*DKLHAHYLEHSFFYNQQS 76
V +KL S S AR + LH+H SFFY ++S
Sbjct: 29 VSRFHKLKSHSGARKIINEMLHSHSELSSFFYAEKS 64
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 335 FDIA-VKTRTFFVVSHLYPHTQTRYLLKIVSTKSR*RCIAFIDRRSFSSH 189
FD+ KT + + +Y H +TR+ +++ K+R + I + S S H
Sbjct: 181 FDVKKYKTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLH 230
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 468 QHTIHRAIRRSQSCRSLRTSRRPHPILS-FSHPCIDL 361
QH ++R + S R R HP LS F HP I +
Sbjct: 236 QHLLYRMLDVDSSTRITMEQIREHPFLSCFVHPNISI 272
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 405 DEKSGVTYTIGFFGLLCGSYAVKSELVHF 491
DE+ G+ + F CG +K LVHF
Sbjct: 33 DEEGGIDLCLTCFQSGCGETGLKHSLVHF 61
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 387 SFSHPCIDLSCTD*SLGIRYRGEDEDILCGIALVPTYSDSVFAQDC 250
+FS+PC+ S D SL +G D D + G ++ P S ++ C
Sbjct: 158 TFSYPCVQRSINDASLVAWTKGFDIDGVEGESVGPLLSAALKRVGC 203
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 75 LIVDYKKMNVLNNARAICPNLWT 143
+I DY ++N+L +A P LWT
Sbjct: 174 VIDDYNRLNLLRTFQAGSPYLWT 196
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +3
Query: 171 IKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLSMWVQVRYHKECPRLHRDIEFPNFN 350
+ + R R R+ N S A + S ++ Q +H RLH+ FP+
Sbjct: 557 VASSRNSSRTRSYSNVSSASSNSLISIISSKPSSSTVQRQTPFHSPFERLHKSFHFPSGE 616
Query: 351 PY 356
P+
Sbjct: 617 PF 618
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 277 VCGYKCDTTKNVL 315
+ GYKCD TKN L
Sbjct: 55 IVGYKCDDTKNDL 67
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -3
Query: 344 VWEFDIAVKTRTFFVVSHLYPHTQTRYLLKI 252
+W F + + VV LY H R++L+I
Sbjct: 303 LWVFVLLIGPYLASVVKELYVHVSRRFMLRI 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,845
Number of Sequences: 5004
Number of extensions: 45768
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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