Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m18
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0406 - 17688069-17690643,17691065-17691132                       29   1.8  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    29   2.4  
06_03_1247 - 28676578-28676730,28677019-28677177,28677314-286774...    29   3.1  
04_04_0359 + 24679907-24680146,24680511-24680939,24681111-246824...    28   4.1  
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    27   9.5  
08_02_0382 - 16526232-16526330,16526449-16526682                       27   9.5  
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632...    27   9.5  

>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = +3

Query: 183 REVRRKRASVNKSDAPLTRFCRNNLEQIPSL----SMWVQVRYHKECPRLH---RDIEFP 341
           ++ + K+    K  + L+R+C   + QIP L      WV  RY      LH   R +  P
Sbjct: 706 KKKKEKKEDDRKIASVLSRYCMFLVAQIPELLPDDETWVSDRYGDTASALHLASRRVVCP 765

Query: 342 NFNPYRKDQYKDVRKTRW 395
                +K     VR +RW
Sbjct: 766 TSRRRKKAIAVAVRSSRW 783


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 153 CQNLTCIKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLSMWVQVRYH 302
           C +  CIK  R+  R+  S      P   FCR +L++I S  +WV   Y+
Sbjct: 178 CSHAMCIKCYRDWYRRSES-----CP---FCRGSLKRIRSRDLWVLTNYN 219


>06_03_1247 -
           28676578-28676730,28677019-28677177,28677314-28677412,
           28677504-28677554,28677712-28678983,28680209-28680412,
           28682330-28682439,28684962-28685067
          Length = 717

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 356 QERSIQGCEKDKMGCGRREVRSDLHDWLLRIALWIVCCKIRA 481
           QE  I+G E  +M C  +   S +H+W LR   W   CK  A
Sbjct: 667 QEEYIEGEEVGRMQCEHQYHVSCIHEW-LRQKNWCPICKTSA 707


>04_04_0359 + 24679907-24680146,24680511-24680939,24681111-24682402,
            24682486-24682737,24682818-24682928,24683016-24683076,
            24683178-24683270,24683348-24683533
          Length = 887

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 201  RASVNKSDAPLTRFCRNNLEQ--IPSLSMWVQVRYHKECPRLHRDIEFPNFNPYRKDQYK 374
            R   N  D P    CR + +   IP++   +    H EC  +  D   P   P   D++K
Sbjct: 819  RYRTNAEDLPRLE-CRTSFDDTGIPNVQRDLCHFIHHECCHVKEDFFDPEGVPATSDEFK 877

Query: 375  DVRK 386
            D+R+
Sbjct: 878  DLRE 881


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = +3

Query: 198 KRASVNKSDAPLTRFCRNNLEQIPSLSMWVQVRYHKECPRLHRDIEFPNFNPYRKDQ--Y 371
           ++   ++ D  + +F + N    PS   W+     ++  R    ++   FNP +K    Y
Sbjct: 121 RKIKADEGDLTILQFVQTNFLYPPSCVQWILKSIGRDWRRYKAALKDKYFNPKKKRSALY 180

Query: 372 K----DVRKTRW 395
           K    DV K +W
Sbjct: 181 KLCPDDVEKDQW 192


>08_02_0382 - 16526232-16526330,16526449-16526682
          Length = 110

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 351 D*SLGIRYRGEDEDILCGIALVPTYSDSVFAQDCFYK 241
           D  LG+R +GE E +L G+  +  Y++    ++   K
Sbjct: 32  DAQLGVRIKGERESVLLGLTAMVEYANHFRTEEVLLK 68


>07_03_1576 -
           27862043-27862129,27862935-27862988,27863042-27863243,
           27865015-27865249,27865338-27865404,27865489-27865639,
           27866898-27866957,27867402-27867466
          Length = 306

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 153 CQNLTCIKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLSMWV 287
           C +  CIK  R+ R +  S      P   FCR++L+++ S  +W+
Sbjct: 181 CSHAMCIKCYRDWRSRSQS-----CP---FCRDSLKRVNSADLWI 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,643
Number of Sequences: 37544
Number of extensions: 289835
Number of successful extensions: 740
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)