Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21m18
(535 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical pr... 29 1.6
U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.7
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting... 28 3.7
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 28 3.7
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 28 3.7
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p... 28 4.8
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z68753-7|CAA92987.1| 240|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 27 8.5
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 8.5
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 27 8.5
>Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical
protein C25F9.4 protein.
Length = 592
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 183 REVRRKRASVNKSDAPLTRFCRNNLEQIPSLSMWVQVRYHKECPRLHRDIE 335
+ + + N+++ +++FC N L I S + +++ K C DIE
Sbjct: 450 KHITNAKKEKNENEPNISKFCNNMLAAIVSYTKEFYIKHFKICAESDEDIE 500
>U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical
protein ZC204.9 protein.
Length = 306
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 120 AICPNLWTGLCCQNLTCIKTVREVRRKRASVNKSDAPLTRFCRNNLEQIPSLSM--WVQ 290
+IC +LWT C Q IK + +R ++ KSD+ T+F + +IP ++ W++
Sbjct: 59 SICVHLWTARCGQLFFKIKPDQSIR--AVNILKSDSIATKF---TMPKIPGFTVKKWLE 112
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 173 KNCTGGATKTSVCQ*KRCTSNE 238
K+C G+ + C+ K+CT+NE
Sbjct: 206 KDCADGSDEPDTCEFKKCTANE 227
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 173 KNCTGGATKTSVCQ*KRCTSNE 238
K+C G+ + C+ K+CT+NE
Sbjct: 206 KDCADGSDEPDTCEFKKCTANE 227
>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
protein protein8, isoform a protein.
Length = 1132
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 273 LSMWVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 416
L W + KE HR + EFP R+D+ + R R DEKS
Sbjct: 110 LQKWEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 273 LSMWVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 416
L W + KE HR + EFP R+D+ + R R DEKS
Sbjct: 110 LQKWEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +3
Query: 273 LSMWVQVRYHKECPRLHR---DIEFPNFNPYRKDQYKDVRKTRWGAGDEKS 416
L W + KE HR + EFP R+D+ + R R DEKS
Sbjct: 110 LQKWEETSERKEYAEFHRVQAESEFPELKREREDRERWARAERIRGEDEKS 160
>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 447 IRRSQSCRSL-RTSRRPHPILSFSHPCI 367
I++S+SC L +T + PHP+ S S CI
Sbjct: 871 IKKSRSCPILWKTEKTPHPMKSKSMTCI 898
>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 447 IRRSQSCRSL-RTSRRPHPILSFSHPCI 367
I++S+SC L +T + PHP+ S S CI
Sbjct: 871 IKKSRSCPILWKTEKTPHPMKSKSMTCI 898
>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
protein ZK524.2d protein.
Length = 2155
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 447 IRRSQSCRSL-RTSRRPHPILSFSHPCI 367
I++S+SC L +T + PHP+ S S CI
Sbjct: 871 IKKSRSCPILWKTEKTPHPMKSKSMTCI 898
>Z78413-3|CAB01659.1| 202|Caenorhabditis elegans Hypothetical
protein T01C3.3 protein.
Length = 202
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 325 AISNSQTLIRTGKINTRM*ERQDGVRATRSPE*PTRLASSDCSV 456
A+ NSQ L G I + M R DG+ R E +LA + +
Sbjct: 17 ALKNSQRLSVRGSIQSNMSSRTDGILQRRLDETERKLAKTSAEL 60
>Z68753-7|CAA92987.1| 240|Caenorhabditis elegans Hypothetical
protein ZC518.4 protein.
Length = 240
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 414 TSRRPHPILSF--SHPCIDLSCT 352
T+R PHP + S PC+++SCT
Sbjct: 108 TTRWPHPSIDSDGSKPCVNISCT 130
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 108 NNARAICPNLWTGLCCQNLTCI 173
NNA ICP + G C N+ C+
Sbjct: 802 NNATCICPPGFYGQYCTNIQCV 823
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 108 NNARAICPNLWTGLCCQNLTCI 173
NNA ICP + G C N+ C+
Sbjct: 802 NNATCICPPGFYGQYCTNIQCV 823
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 27.1 bits (57), Expect = 8.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 108 NNARAICPNLWTGLCCQNLTCI 173
NNA ICP + G C N+ C+
Sbjct: 802 NNATCICPPGFYGQYCTNIQCV 823
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
B0496.3a protein.
Length = 1551
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 267 PSLSMWVQVRYHKECPRLHRDIEFPNFNP 353
PS +V+ RYH + R HRD ++ +P
Sbjct: 1099 PSALGYVRPRYHDDSYRTHRDSDYRPMSP 1127
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
B0496.3b protein.
Length = 1592
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 267 PSLSMWVQVRYHKECPRLHRDIEFPNFNP 353
PS +V+ RYH + R HRD ++ +P
Sbjct: 1140 PSALGYVRPRYHDDSYRTHRDSDYRPMSP 1168
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,500,434
Number of Sequences: 27780
Number of extensions: 265286
Number of successful extensions: 734
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -