Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m17
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   0.87 
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   2.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   3.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   3.5  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.2  
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    25   8.1  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = -3

Query: 223 SFQIVIAPCVSNDLTKRLCPSLINLTSHT*VFEIELATLN*LIYVILEKIVVFFNLYFTS 44
           S+QI+  P +SN +   L   L+ L S   V EI+LA +  L+  +L  I     L+  +
Sbjct: 111 SYQIIPEPTISNSIESHLRKCLMVLLSR--VDEIDLADV--LVKTVLPLITKHLRLFVEA 166

Query: 43  LQMI 32
            Q++
Sbjct: 167 EQLV 170


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 138 VWEVRFIREGQRRFVKSLDTHGAITIWKEENSTM 239
           V +VR+I  G  RF+ +    G + +W   N ++
Sbjct: 394 VSDVRYIESGVNRFIATSGYDGCVKLWNPLNCSL 427


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +3

Query: 366  SKNNRKPNYCEMDWHNYHRLHVIYAFMENLSHEYPYLCSVAVIGKSAEGRDIKILKVSNG 545
            S+  R+      DW  YH  +++    +  S + PY   +  + +S +    K L    G
Sbjct: 897  SRTQREEYLYGEDWEAYHSANLLTHIGQAFSRDQPYKIYIQDVMRSTKDMLKKALMDEGG 956

Query: 546  NEYNVG 563
            + Y  G
Sbjct: 957  SFYLCG 962


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 212 CYRSMCIQ*FNKTPLSFSNKSHFPYLSI 129
           C+RS+ +  +N  P  F  + H  YL++
Sbjct: 202 CFRSLALSGWNPVPAEFVIQGHLLYLTV 229


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 291 EREIPYSIAIGDVGSVLSREQGIKYSKNNRKPN 389
           ER +P   A+G+ GS   +E+ +KYS   +  N
Sbjct: 136 ERTLPVIEALGNWGSESLKERSLKYSNRLQASN 168


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 113  HFELINLRYSRENCCFF*FIFYVFTNDFYN 24
            HF+L N   + E   F  +I Y+   DF N
Sbjct: 1298 HFDLFNAESTAEAFSFEFYILYLLLGDFLN 1327


>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +3

Query: 18  HAVVKIICKD---VKYKLKKTTIFSRIT*IN*FKVANSISNTQVWEVRFIREGQR 173
           H  +K++ +D   V +K+KKTT FS++  I   +   S+++     +RF+ +G+R
Sbjct: 35  HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNS-----LRFLVDGER 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,608
Number of Sequences: 5004
Number of extensions: 53255
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)