Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21m12
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0194 + 26287854-26288233,26289810-26290044 185 3e-47
01_06_0526 - 30016524-30016973 140 8e-34
03_04_0096 + 17270261-17270424,17270573-17270669 94 9e-20
07_01_0122 - 926971-927378 78 6e-15
01_06_0525 - 30014497-30014731,30015509-30015573 50 2e-06
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 29 2.8
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 3.7
07_03_1492 + 26960876-26960986,26961910-26962074,26962153-269622... 28 6.4
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 27 8.5
>05_06_0194 + 26287854-26288233,26289810-26290044
Length = 204
Score = 185 bits (450), Expect = 3e-47
Identities = 81/116 (69%), Positives = 91/116 (78%)
Frame = +3
Query: 243 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 422
S AE ++++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQ
Sbjct: 48 SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQ 107
Query: 423 SDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDR 590
SD MIVAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN CDR
Sbjct: 108 SDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 163
>01_06_0526 - 30016524-30016973
Length = 149
Score = 140 bits (339), Expect = 8e-34
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +3
Query: 243 SNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQ 422
S AE ++++DDL+NW R+GS+WPMTFGLACCAVEMMH A RYD DR+GV+FR SPRQ
Sbjct: 43 SKAAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQ 102
Query: 423 SDVMIVAGTLTNKMAPALRK 482
SD MIVAGTLTNKMAPALRK
Sbjct: 103 SDCMIVAGTLTNKMAPALRK 122
>03_04_0096 + 17270261-17270424,17270573-17270669
Length = 86
Score = 93.9 bits (223), Expect = 9e-20
Identities = 42/55 (76%), Positives = 45/55 (81%)
Frame = +3
Query: 318 MTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 482
MTFGLAC AVEMMH A RYD DR+GV+F SPRQSD MI+ GTLTNKM PALRK
Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRK 55
>07_01_0122 - 926971-927378
Length = 135
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/51 (70%), Positives = 39/51 (76%)
Frame = +3
Query: 330 LACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRK 482
LA CAVEMMH A YD DR+ V+FR SPRQSD MI+ GTLTNKM PAL K
Sbjct: 58 LAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGK 108
>01_06_0525 - 30014497-30014731,30015509-30015573
Length = 99
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/39 (56%), Positives = 24/39 (61%)
Frame = +3
Query: 474 LRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDR 590
L +VYDQMP+PRWVISMGSCAN CDR
Sbjct: 20 LVEVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDR 58
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 306 SLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKM 464
S+ + L + ++ IAA R + +++++SP QS V++V G +K+
Sbjct: 176 SVTDLQLNLLGSIIAVLTIAATRLKVSSTQLLYQSSPYQSAVLLVTGPFVDKL 228
>07_03_1567 - 27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 352 ISTAQQARPKVMGQREPFLPQFNKSSSRATAISAILLASWKGEYGRFSVG 203
+S + P +G+RE FLP+ +RA+A+ A+ +G+ + G
Sbjct: 1358 LSLTAKIAPATLGERETFLPRAPNLDNRASALLQKEFANLRGKSSKAKGG 1407
>07_03_1492 +
26960876-26960986,26961910-26962074,26962153-26962271,
26962559-26962633,26963063-26963156,26963239-26963298,
26963474-26963539,26963622-26963720,26964027-26964035
Length = 265
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 296 EERFPLAHDLWSSLLRCR-DDAYCC 367
E R LAH WS LLR + D+AYCC
Sbjct: 92 EGRKDLAH-CWSILLRQKVDEAYCC 115
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 189 LPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMT 323
+P NP KRPY A+ +AE+ ++DDLL +KG + P T
Sbjct: 835 VPGTNPIHKRPYR--MAANELAEVK-RQVDDLL---QKGYIRPST 873
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,636,177
Number of Sequences: 37544
Number of extensions: 359766
Number of successful extensions: 841
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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