Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m12
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical pr...   186   1e-47
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   3.3  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   3.3  
AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical ...    27   10.0 

>Z79758-2|CAB02132.1|  199|Caenorhabditis elegans Hypothetical
           protein W10D5.2 protein.
          Length = 199

 Score =  186 bits (453), Expect = 1e-47
 Identities = 82/122 (67%), Positives = 99/122 (81%)
 Frame = +3

Query: 225 SPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVF 404
           +PF + S+ AE A+ARLDD+LN  ++GS+WP+TFGLACCAVEMMH AAPRYDMDRYGVVF
Sbjct: 37  TPFLNPSSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVF 96

Query: 405 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXC 584
           RASPRQ+D++ VAGT+TNKMAPALR++YDQMP+ +WVISMGSCAN              C
Sbjct: 97  RASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGC 156

Query: 585 DR 590
           DR
Sbjct: 157 DR 158


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 384 PYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPY 247
           P  ++VQQ ++    +K ++RSWA   LS+ N ++    P P + +
Sbjct: 85  PIDTDVQQPSAHPVSTKRNKRSWADNLLSAINQVACYDSPIPLMDH 130


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 384 PYHSEVQQYASSLQRSKLDQRSWAKGNLSSPNSISHQVEPQPSLPY 247
           P  ++VQQ ++    +K ++RSWA   LS+ N ++    P P + +
Sbjct: 85  PIDTDVQQPSAHPVSTKRNKRSWADNLLSAINQVACYDSPIPLMDH 130


>AC006757-3|AAF60541.2|  916|Caenorhabditis elegans Hypothetical
           protein Y40C7B.1 protein.
          Length = 916

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 538 LAQLPIEITHLGSGIWSYTFLKAGAILFVK 449
           L Q+PI+I  LG+ IW Y    +G ++  K
Sbjct: 551 LGQIPIKIKSLGNKIWYYKNDYSGGVISSK 580


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,763,200
Number of Sequences: 27780
Number of extensions: 290274
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)