Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte21m11
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0651 + 30644241-30644615,30644751-30644858                       33   0.11 
06_01_1033 - 8080179-8080685                                           33   0.15 
06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168           27   7.4  

>02_05_0651 + 30644241-30644615,30644751-30644858
          Length = 160

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 279 MVKEKPNSIRIYDDEGFRRRAACIC--VRSDAETEVLLVTSSRRPDNWIXXXXXXXXXXX 452
           +V  +   ++ Y   G R    CI   VRS  E EVL++TS ++    +           
Sbjct: 4   LVARQGRELQRYTSAGGRIVVGCIPYRVRSGGEMEVLVITS-QKGHGMMFPKGGWELDES 62

Query: 453 XXXTAMREVLEEAGVIGKLGRCLG 524
               A RE LEEAGV G     LG
Sbjct: 63  MDEAARREALEEAGVRGDTETSLG 86


>06_01_1033 - 8080179-8080685
          Length = 168

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
 Frame = +3

Query: 279 MVKEKPNSIRIYDDE-GFRRRAACIC--VRSDAE-TEVLLVTSSRRP----DNWIXXXXX 434
           MV  +   ++ Y D  G R    CI   VR D    EVL+++S ++     D  +     
Sbjct: 5   MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGVEVLVISSQKKGAAAGDVVMFPKGG 64

Query: 435 XXXXXXXXXTAMREVLEEAGVIGKLGRCLG 524
                     A RE LEEAGV+G++G  LG
Sbjct: 65  WELDESVDEAARREALEEAGVLGEIGASLG 94


>06_01_0366 - 2632115-2632180,2632359-2632470,2632736-2634168
          Length = 536

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 494 SGFLKYLPHRSDRRLLFRLYSPARH 420
           +G L + PH  DRR LFR  SP RH
Sbjct: 181 TGGLSWEPHH-DRRSLFRPRSPPRH 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,690,273
Number of Sequences: 37544
Number of extensions: 226240
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)