Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte21m10
(515 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 1.7
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 2.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 3.8
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 26 3.8
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 26 3.8
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 25 5.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.1
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 5.1
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 5.1
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 25 6.7
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 6.7
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 25 8.9
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 8.9
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +1
Query: 286 RAETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEE 426
+A + ++D + K+ERE+ + +D +R A T+H+ +
Sbjct: 508 KASSAQEAIDKKEKMEREMKNKNLELADMILERDRARHELETMHRSQ 554
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 406 WSYYPLPSDLFGNPNY 359
+S+Y LPS + GNP Y
Sbjct: 341 FSFYSLPSTVIGNPKY 356
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +1
Query: 316 DEAKIERELAEMYKDN----SDYQTDRSEADSSSTTVHKE 423
+E K +R LAE Y++ S+ T +SEAD H+E
Sbjct: 401 NENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEHEE 440
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 34 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 132
R+ L L+TI A NVK+++E L EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 34 RLIHFLVLLTIHLAVAKNNNVKTLTESLGREII 132
R+ L L+TI A NVK+++E L EII
Sbjct: 145 RVNQALALITIGAREAAFRNVKSISECLAEEII 177
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 79 AKNNNVKTLTESLGREIIEIDNPIKELPPGLEEEPSA 189
A ++ V+ L E RE ++ + KE GLEE P +
Sbjct: 5 ASDSGVEKLVEENKREEVKKNEEEKEFDLGLEENPDS 41
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -3
Query: 498 DFLSTVQIWLKLEARRSAPG 439
D+L++++ + L+ RRSAPG
Sbjct: 447 DWLNSIRAQINLDVRRSAPG 466
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 492 LSTVQIWLKLEARRSAPGDQITLLLVYSRGATIRFRAICLVIRIIFVHLS*FPLDFGLVV 313
L+ ++WL P DQ+ L+L R RA+ L+ + F+ L + +D L +
Sbjct: 471 LTAFEVWLSQGLISRKPPDQLPLVLQVLLSQVHRLRALILLSK--FLDLGVWAVDLALSI 528
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 346 EMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASGFKFQ 471
E +NSDY +D SS + + + I+RS + G Q
Sbjct: 245 EKCSENSDYSSDSGSYSSSYSRHLDDRASYISRSSSGGSNAQ 286
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 82 KNNNVKTLTESLGREIIEIDNPIKEL 159
+N N++ + ++G E++E + IKEL
Sbjct: 145 ENENLQDMLRNVGNELVESRDEIKEL 170
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 289 AETTNSSVDDEA--KIERELAEMYKDNSDYQTDRSEADSSSTTVHKEE 426
+ ++ S ++EA KIE + +S+ + SE++SSS+ +EE
Sbjct: 141 SSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEE 188
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = -3
Query: 510 PEPFDFLSTVQIW---LKLEARRSAPGDQI 430
P FD+LS +Q W RSAPG+ +
Sbjct: 440 PSRFDWLSQIQTWKERFPFTFTRSAPGELV 469
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 292 ETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTT 411
E+ + ++ + KIE E E+ +D+ + + + E +STT
Sbjct: 196 ESQGTEINLKQKIEEENDEILEDSKESKDENEENKETSTT 235
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 61 TIHLAVAKNNNVKTLT-ESLGREIIEIDNPIKELPPGLEEEPSAENDEDGTSAT 219
T + A++ + T T + E++E+D+ KEL G ++E ++ +D S T
Sbjct: 164 TRYPAISSKGPITTDTNDEPDMEVMELDDFAKELELGFDQEFNSIDDPSTVSQT 217
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +1
Query: 289 AETTNSSVDDEAKIERELAEMYKDNSDYQTDRSEADSSSTTVHKEEGNLIARSRASG 459
A +S DDE E E + N ++ + E S S V +GN + + G
Sbjct: 352 ANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVKKMNEDG 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,990,888
Number of Sequences: 5004
Number of extensions: 39976
Number of successful extensions: 112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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